| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,957,586 – 21,957,686 |
| Length | 100 |
| Max. P | 0.788383 |
| Location | 21,957,586 – 21,957,686 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 88.44 |
| Mean single sequence MFE | -23.94 |
| Consensus MFE | -21.93 |
| Energy contribution | -21.49 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.788383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21957586 100 - 22407834 --------GAUGGAAU----------CC--AGAACAAAAGCCACCGACAGUCAUACAGCUUGCAAAUUGGCCAACAUUGAAACAGACAGGCUAAAGCUGCAAGCGAAUUGGAACAAGGCU --------..(((...----------))--).......((((........(((....(((((((..((((((................))))))...)))))))....))).....)))) ( -22.91) >DroSec_CAF1 8662 100 - 1 --------GCUGGAAU----------CC--AGAACAAAAGCCACCGACAGUCAUAGAGCUUGCAAAUUGGCCAACAUUGAAACAGACAGGCUAAAGCUGCAAGCGAAUUGGAACAAGGCU --------.((((...----------))--))......((((........(((....(((((((..((((((................))))))...)))))))....))).....)))) ( -25.71) >DroSim_CAF1 11375 100 - 1 --------GCUGGAAU----------CC--AGAACAAAAGCCACCGACAGUCAUACAGCUUGCAAAUUGGCCAACAUUGAAACAGACAGGCUAAAGCUGCAAGCGAAUUGGAACAAGGCU --------.((((...----------))--))......((((........(((....(((((((..((((((................))))))...)))))))....))).....)))) ( -25.71) >DroEre_CAF1 10038 100 - 1 --------GAUGGAAU----------CC--AGAACAAAAGCCACCGACAGUCAUUCAGCUUGCAAAUUGGCCAACAUUGAAACAGACAGGCUAAAGCUGCAAGCGAAUUGGAACAAGGCU --------..(((...----------))--).......((((........((((((.(((((((..((((((................))))))...)))))))))).))).....)))) ( -23.31) >DroAna_CAF1 13323 112 - 1 --------ACGUGAACGUGAAUAAGACCAGAGAACAAAAGCCACCGACAAUCAUUCAGUUUGCAAAUUGGCCAACAUUGAAACAGACAGGCUAAAGCUGCAAGCGAAUUGGAACAAGGCU --------(((....)))....................((((.....((((...((.(((((((..((((((................))))))...)))))))))))))......)))) ( -23.19) >DroPer_CAF1 23869 108 - 1 GUGAGAACUCUGAGAC----------UG--AGAACAAAAGCCACCGACAAUCAUUCAGUUUGCAAAUUGGCCAACAUUGAAACAGACAGGCUAAAGCUGCAAGCGAAUUGGAACAAGGCU .......(((......----------.)--))......((((.....((((...((.(((((((..((((((................))))))...)))))))))))))......)))) ( -22.79) >consensus ________GCUGGAAU__________CC__AGAACAAAAGCCACCGACAGUCAUACAGCUUGCAAAUUGGCCAACAUUGAAACAGACAGGCUAAAGCUGCAAGCGAAUUGGAACAAGGCU ......................................((((.....((((......(((((((..((((((................))))))...)))))))..))))......)))) (-21.93 = -21.49 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:56 2006