Locus 7787

Sequence ID 2L_DroMel_CAF1
Location 21,950,128 – 21,950,218
Length 90
Max. P 0.993375
window12486

overview

Window 6

Location 21,950,128 – 21,950,218
Length 90
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 80.17
Mean single sequence MFE -15.21
Consensus MFE -10.66
Energy contribution -10.94
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -2.75
Structure conservation index 0.70
SVM decision value 2.39
SVM RNA-class probability 0.993375
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21950128 90 - 22407834
CACUUGUCA------ACGC-AGACAAAUUC--GCAUAAUGAAAUGUUAAUUCUGACACGUCAUUAAUAUAUUUUGUUUGUCCCCAAACCACCA-ACCAUC--
.........------..((-(((((((...--...((((((..(((((....)))))..))))))......))))))))).............-......-- ( -17.10)
>DroSec_CAF1 104 90 - 1
CACUUGUCA------AAGC-AGACAAAUUC--GCAUAAUGAAAUGUUAAUUCUGACACGUCAUUAAUAUAUUUUGUUUAUCCCCAAACCACCA-ACCAUC--
.........------....-(((((((...--...((((((..(((((....)))))..))))))......)))))))...............-......-- ( -13.10)
>DroSim_CAF1 3341 90 - 1
CACUUGUCA------AAGC-AGACAAAUUC--GCAUAAUGAAAUGUUAAUUCUGACACGUCAUUAAUAUAUUUUGUUUAUCCCCAAACCACCA-ACCAUC--
.........------....-(((((((...--...((((((..(((((....)))))..))))))......)))))))...............-......-- ( -13.10)
>DroAna_CAF1 6186 95 - 1
CUCCAUUCA------AUCCAAAACAAAUUCCAACAUAAUGAAAUGUUAAUUCUGACACGUCAUUAAUAUAUUUUGUCUGCCCUAUAGCUGCCA-GUUAUCGG
.........------.......(((((........((((((..(((((....)))))..))))))......)))))....((.(((((.....-))))).)) ( -13.54)
>DroPer_CAF1 13532 96 - 1
ACACUCUCUACACACACAC-AGAGAAAUUC--GUAUAAUGAAAUGUUAAUUUUGACACGUCAUUAAUAUAUUUUGUCUGGCCUCUA-CAACCAGACCAAC--
....(((((..........-))))).....--...((((((..(((((....)))))..)))))).........((((((......-...))))))....-- ( -19.20)
>consensus
CACUUGUCA______AAGC_AGACAAAUUC__GCAUAAUGAAAUGUUAAUUCUGACACGUCAUUAAUAUAUUUUGUUUGUCCCCAAACCACCA_ACCAUC__
....................(((((((........((((((..(((((....)))))..))))))......)))))))........................ (-10.66 = -10.94 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:54 2006