Locus 7786

Sequence ID 2L_DroMel_CAF1
Location 21,949,983 – 21,950,080
Length 97
Max. P 0.815024
window12485

overview

Window 5

Location 21,949,983 – 21,950,080
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.73
Mean single sequence MFE -32.27
Consensus MFE -16.45
Energy contribution -16.87
Covariance contribution 0.42
Combinations/Pair 1.10
Mean z-score -2.43
Structure conservation index 0.51
SVM decision value 0.66
SVM RNA-class probability 0.815024
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21949983 97 - 22407834
CCAUCUGGCCAAAACAACCUCAACGAUUUGGC-----------------------CAGGCUCAAUUGACGUGCAGCGAUGUCGUAAUUAGUUUUGACGUUUCUCGUUGCACAAAUUAAUU
...((((((((((.(.........).))))))-----------------------))))..........((((((((((((((..........)))))....)))))))))......... ( -31.00)
>DroPse_CAF1 13297 120 - 1
CCGCCCUCCAAAGGCAACCUCAACAUUUUGGGGGCGGCGGUGGCACUGGCUGGGGGCGGCUCAAUUGACGUCCAGCGAUGUCGUAAUUAGUUUUGACGUUUCUCGUUGCACAAAUUAAUU
((((((.((....((..((((((....))))))...))...(((....))))))))))).......((((((....))))))..((((((((((((((.....)))))...))))))))) ( -39.00)
>DroSim_CAF1 3200 97 - 1
CCAUCUGGCCAAAACAACCUCAACGAUUUGGC-----------------------CAGGCUCAAUUGACGUGCAGCGAUGUCGUAAUUAGUUUUGACGUUUCUCGUUGCACAAAUUAAUU
...((((((((((.(.........).))))))-----------------------))))..........((((((((((((((..........)))))....)))))))))......... ( -31.00)
>DroEre_CAF1 1880 97 - 1
CCAUCUGGCCAAAGCAACCUCAACAAUUUGGC-----------------------CAGGCUCAAUUGACGUGCAGCGAUGUCGUAAUUAGUUUUGACGUUUCUCGUUGCACAAAUUAAUU
...((((((((((.............))))))-----------------------))))..........((((((((((((((..........)))))....)))))))))......... ( -31.32)
>DroAna_CAF1 6056 94 - 1
---UUGGGCCAAAAUAACCUCAACGUUUCGGC-----------------------CAAGCUCAAUUGACGUGCAGCGAUAUCGUAAUUAGUUUUGACGUUUCUCGUUGCACAAAUUAAUU
---...((((.((((.........)))).)))-----------------------).............(((((((((...(((((......)).)))....)))))))))......... ( -23.40)
>DroPer_CAF1 13377 119 - 1
CCGCCCUCCAAAAGCAACCUCAACAUUUUGGGGGCGGCGGUAGCACUGGAUGG-GGCGGCUCAAUUGACGUCCAGCGAUGUCGUAAUUAGUUUUGACGUUUCUCGUUGCACAAAUUAAUU
((((((.((((((............))))))))))))..(((((.(((((((.-..(((.....))).))))))).(((((((..........)))))))....)))))........... ( -37.90)
>consensus
CCAUCUGGCCAAAACAACCUCAACAAUUUGGC_______________________CAGGCUCAAUUGACGUGCAGCGAUGUCGUAAUUAGUUUUGACGUUUCUCGUUGCACAAAUUAAUU
.......((((((.............)))))).....................................((((((((((((((..........)))))....)))))))))......... (-16.45 = -16.87 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:53 2006