| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,940,812 – 21,940,927 |
| Length | 115 |
| Max. P | 0.554691 |
| Location | 21,940,812 – 21,940,927 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.56 |
| Mean single sequence MFE | -38.02 |
| Consensus MFE | -25.78 |
| Energy contribution | -28.58 |
| Covariance contribution | 2.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21940812 115 - 22407834 CAGUGCUCCCGCUGACUGAUGGGUUACUCAUCCGGAAAUGUUUUUUCAGUCAGCCUAGCCCCAGCCAAGUGGCAAGCUCCAU-C--GACUU--CGCGGCCAGCGAGACAGCAGCACAAAG ..(((((...(((((((((((((...)))))).(((((....))))))))))))...((....(((....))).........-.--...((--(((.....)))))...))))))).... ( -37.00) >DroSec_CAF1 229038 115 - 1 CAGUGCUCCCGCUGACUGAUGGGUAACUCAUCCGGAAAUGUUUUUUCAGUCAGCCUUGCCGCAGACAAGUGGCAAGUUCCCU-C--GACUU--CGCGGCCAACAAGACAGCAGCACAAAG ..(((((.(.(((((((((((((...)))))).(((((....))))))))))))((((((((......))))))))...((.-(--(....--)).))...........).))))).... ( -39.90) >DroSim_CAF1 173958 115 - 1 CAGUGCUCCCGCUGACUGAUGGGUUACUCAUCCGGAAAUGUUUUUUCAGUCAGCCUUGCCGCAGACAAGUGGCAAGUUCCCU-C--GACUU--CGCGGCCAACGAGACAGCAGCACAAAG ..(((((.(.(((((((((((((...)))))).(((((....))))))))))))((((((((......))))))))...((.-(--(....--)).))...........).))))).... ( -39.90) >DroEre_CAF1 201483 118 - 1 UAGUGCUCCCGCUGACUGAUGGGUUACUCAUCCGGAAAUGUUUUUUAAGUCAGCCCUGCCGCAGACAAGUGGCAAGUGCCUAGUGGCAAGU--CGCGGCCAACGAGACAGCAACACAAAG ...((((...(((((((((((((...))))))..((((....)))).)))))))..((((((......))))))..((((....)))).((--(.((.....)).)))))))........ ( -38.10) >DroYak_CAF1 192833 103 - 1 CAGUGCUCCCGCUGACUGAUGGGUUACUCAUCCGGAAAUUUUUUUUAAGUCAGCCUUGCCGCAGACAAGU-------CCCUA----CAAGUCUCGCGGCCACCGAGA------CACAAAG ..((((((..(((((((((((((...))))))..((((....)))).)))))))...(((((((((..((-------....)----)..)))).)))))....))).------))).... ( -35.20) >consensus CAGUGCUCCCGCUGACUGAUGGGUUACUCAUCCGGAAAUGUUUUUUCAGUCAGCCUUGCCGCAGACAAGUGGCAAGUUCCCU_C__GACUU__CGCGGCCAACGAGACAGCAGCACAAAG ..(((((...(((((((((((((...)))))).(((((....))))))))))))((((((((......))))))))...................................))))).... (-25.78 = -28.58 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:47 2006