Locus 7782

Sequence ID 2L_DroMel_CAF1
Location 21,938,514 – 21,938,634
Length 120
Max. P 0.812700
window12478

overview

Window 8

Location 21,938,514 – 21,938,634
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.50
Mean single sequence MFE -34.02
Consensus MFE -23.77
Energy contribution -24.13
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.70
SVM decision value 0.65
SVM RNA-class probability 0.812700
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21938514 120 - 22407834
ACAGGUGGCAGUCUCUAAUUGGGCUUCUUAAUUUUCUGACACUUGAGUUUGGUACACGCAUGAAGAAGCAGACAAUUGCCUGGCUAAUCUCGCCGCCUGAAAUUCAGCAGAACUCUACUC
.((((((((.(((...(((((((...)))))))....)))....(((.(((((.((.(((................))).))))))).)))))))))))..................... ( -32.39)
>DroSec_CAF1 226971 106 - 1
ACAGGUGGCAGUCUCUAAUUGGGCUUCUUAAUUUUCUGACACUUGAGUUUGGUAC--------------AGACAAUUGCCUGGCUAAUCUCGCCGCCUGAGAUUCAGCAGAACUCUACUC
.((((((((.(((...(((((((...)))))))....)))....(((.(((((.(--------------((........)))))))).)))))))))))((((((....))).))).... ( -33.50)
>DroSim_CAF1 171903 106 - 1
ACAGGUGGCAGUCUCUAAUUGGGCUUCUUAAUUUUCUGACACUUGAGUUUGGUAC--------------AGACAAUUGCCUGGCUAAUCUCGCCGCCUGAGAUUCAGCAGAACUCUACUC
.((((((((.(((...(((((((...)))))))....)))....(((.(((((.(--------------((........)))))))).)))))))))))((((((....))).))).... ( -33.50)
>DroEre_CAF1 199156 120 - 1
ACAGGUGGCAGUCUCUAAUUGGGCUUCUUAAUUUUCUGACACUUAAGUUUGGUGAACGCCUGAAGAAGCAGACAAUUGCCUGGCUAACUUCGCCGCCUGAAAUUCCGCAGAACGCUACUC
.((((((((((((..((((((.(((((((........(((......))).(((....)))..)))))))...))))))...))))......)))))))).......((.....))..... ( -34.70)
>DroYak_CAF1 190490 115 - 1
ACAGGUGGCAGUCUGUAAUUGGGCUUCUUAAUUUUCUGACACUUAAGUUUAGUGAAUGCCUGAAGAAGUAGACAAAUG-----CUGACUUCGCCGCCUGAAAUUCCGCAGAACUCUACUC
.((((((((((((.(((.(((.(((((((.((((.((((.((....)))))).)))).....)))))))...))).))-----).))))..))))))))..................... ( -36.00)
>consensus
ACAGGUGGCAGUCUCUAAUUGGGCUUCUUAAUUUUCUGACACUUGAGUUUGGUACA_GC_UGAAGAAG_AGACAAUUGCCUGGCUAAUCUCGCCGCCUGAAAUUCAGCAGAACUCUACUC
.((((((((.(((...(((((((...)))))))....))).....(((..((((......................))))..)))......))))))))..................... (-23.77 = -24.13 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:46 2006