Locus 7781

Sequence ID 2L_DroMel_CAF1
Location 21,937,976 – 21,938,077
Length 101
Max. P 0.985637
window12476 window12477

overview

Window 6

Location 21,937,976 – 21,938,077
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 94.72
Mean single sequence MFE -41.60
Consensus MFE -38.68
Energy contribution -38.97
Covariance contribution 0.29
Combinations/Pair 1.11
Mean z-score -3.51
Structure conservation index 0.93
SVM decision value 2.01
SVM RNA-class probability 0.985637
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21937976 101 + 22407834
GUCGCCUUGGUUGAAUUUGGCCGCUUAAUGGUGUUCGCUACGGUGGAACACCAUUAAUAUGGGCCUGGGGAGGUGAAAGAGUUUAAUCAGGGCGCUGCGUU
((((((((((((((((((..(((.((((((((((((((....)).))))))))))))..)))((((....))))....))))))))))))))))..))... ( -45.00)
>DroSec_CAF1 226322 101 + 1
GUCGUCUUGGUUGAUUUUGGCCGCUUAAUGGUGUUCGCUGCGGUGGAACGCCAUUAAUAUGUGCCUGGGGCGGUGGGAGAGUUUAAUCAGGGCGCUGCGUU
((((((((((((((.(((..((((((((((((((((((....)).)))))))))))......(((...))))))))..))).))))))))))))..))... ( -39.90)
>DroSim_CAF1 171140 101 + 1
GUCGUCUUGGUUGAUUUUGGCCGCUUAAUGGUGUUCGCUGCGGUGGAACGCCAUUAAUAUGUGCCUGGGGCGGUGGGAGAGUUUAAUCAGGGCGCUGCGUU
((((((((((((((.(((..((((((((((((((((((....)).)))))))))))......(((...))))))))..))).))))))))))))..))... ( -39.90)
>consensus
GUCGUCUUGGUUGAUUUUGGCCGCUUAAUGGUGUUCGCUGCGGUGGAACGCCAUUAAUAUGUGCCUGGGGCGGUGGGAGAGUUUAAUCAGGGCGCUGCGUU
((((((((((((((.(((.(((((((((((((((((((....)).))))))))))))......(....)))))).)))....))))))))))))..))... (-38.68 = -38.97 +   0.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 21,937,976 – 21,938,077
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 94.72
Mean single sequence MFE -23.70
Consensus MFE -19.68
Energy contribution -19.68
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.25
Structure conservation index 0.83
SVM decision value 0.21
SVM RNA-class probability 0.635861
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21937976 101 - 22407834
AACGCAGCGCCCUGAUUAAACUCUUUCACCUCCCCAGGCCCAUAUUAAUGGUGUUCCACCGUAGCGAACACCAUUAAGCGGCCAAAUUCAACCAAGGCGAC
.......((((.(((..........)))........((((....(((((((((((((......).))))))))))))..))))............)))).. ( -30.30)
>DroSec_CAF1 226322 101 - 1
AACGCAGCGCCCUGAUUAAACUCUCCCACCGCCCCAGGCACAUAUUAAUGGCGUUCCACCGCAGCGAACACCAUUAAGCGGCCAAAAUCAACCAAGACGAC
..(((.(((....((........))....)))....(((.....(((((((.(((((......).)))).)))))))...)))............).)).. ( -20.40)
>DroSim_CAF1 171140 101 - 1
AACGCAGCGCCCUGAUUAAACUCUCCCACCGCCCCAGGCACAUAUUAAUGGCGUUCCACCGCAGCGAACACCAUUAAGCGGCCAAAAUCAACCAAGACGAC
..(((.(((....((........))....)))....(((.....(((((((.(((((......).)))).)))))))...)))............).)).. ( -20.40)
>consensus
AACGCAGCGCCCUGAUUAAACUCUCCCACCGCCCCAGGCACAUAUUAAUGGCGUUCCACCGCAGCGAACACCAUUAAGCGGCCAAAAUCAACCAAGACGAC
..(((.(.(((.((....................))))).)...(((((((.(((((......).)))).))))))))))..................... (-19.68 = -19.68 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:45 2006