Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,936,299 – 21,936,394 |
Length | 95 |
Max. P | 0.779860 |
Location | 21,936,299 – 21,936,394 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.43 |
Mean single sequence MFE | -20.26 |
Consensus MFE | -11.02 |
Energy contribution | -12.86 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.06 |
Mean z-score | -1.93 |
Structure conservation index | 0.54 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21936299 95 + 22407834 UAGUAUGUCAAUCUGUCCAAUUCAUUCACUCACCCGGCCAGACAGGACGUCAGGCCGUCACUCACUCACUCAAUUCAAA-------------------------CCUUGGCAAACUAAAC ((((.((((((..((.......))..........(((((.(((.....))).)))))......................-------------------------..)))))).))))... ( -19.50) >DroSec_CAF1 224589 95 + 1 UAGUAUGUCAAUCUGUCCAAUUCAUUCACUCACCCGGCCAGACAGGACGUCAGGCCGUCACUCACUCACUCAAUUCAAA-------------------------CCUUGGCAAACUAAAC ((((.((((((..((.......))..........(((((.(((.....))).)))))......................-------------------------..)))))).))))... ( -19.50) >DroSim_CAF1 169363 94 + 1 UAGUAUGUCAAUCUGUCCAAUUCAUUCACUCACCCGGCCAGACAGGACGUCAGGCCGUCACUCACUCACUCAAUUCAAA-------------------------CCUUGGCAAACUA-AC ((((.((((((..((.......))..........(((((.(((.....))).)))))......................-------------------------..)))))).))))-.. ( -19.50) >DroYak_CAF1 186821 81 + 1 UAGUACGUCAAUCUGUCCAAUUCAUUCACUCACUCGGCCAGACAGGACGUCAGGCCG----UCACUCAUUCAGAUCA-----------------------------------AACUAAAC ((((......(((((...................(((((.(((.....))).)))))----.........)))))..-----------------------------------.))))... ( -14.89) >DroAna_CAF1 164951 119 + 1 GAGUACGUCAAUCCGUCCAACUCAUUCACUCAUUUGGCCAGACAGGAUGUCAG-CCGUCACUCACUCACUCAAUUCAGAGCCAAAGCCAAAGCUCGAGCCAGAGCCAUGGAAAACCGAGG (((((((......)))...)))).....(((.((((((..(((.((.......-)))))..........((......)))))))).(((..((((......))))..)))......))). ( -27.90) >consensus UAGUAUGUCAAUCUGUCCAAUUCAUUCACUCACCCGGCCAGACAGGACGUCAGGCCGUCACUCACUCACUCAAUUCAAA_________________________CCUUGGCAAACUAAAC ((((.(((((....(.......)...........(((((.(((.....))).)))))..................................................))))).))))... (-11.02 = -12.86 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:44 2006