Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,218,975 – 2,219,095 |
Length | 120 |
Max. P | 0.960770 |
Location | 2,218,975 – 2,219,095 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.17 |
Mean single sequence MFE | -39.12 |
Consensus MFE | -35.00 |
Energy contribution | -35.32 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -1.61 |
Structure conservation index | 0.89 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2218975 120 + 22407834 CUUAAAGGCCACUUUGGGCAUUAACUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUUGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUCAACAACUCCAACAAACUGAU .......(((.((((((.(((.....((((...(((((.(((((((.....)))).((....))......))).))))).))))))).)))))))))....................... ( -39.30) >DroSim_CAF1 3477 120 + 1 CUUAAAGGCCACUUUGGGCAUUAACUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUCGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUCAACAACUCCAACAAACUGAU .......(((.((((((.((((.....(((((...(....).((((.....)))).).))))(((((........)))))...)))).)))))))))....................... ( -39.50) >DroEre_CAF1 3462 120 + 1 CUUAAAGGCCACUUUGGGCAUCAAUUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUCGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUUAACAACUCCAACAAACUCAU ......(((((((..(((((((.....((......))((((.((((.....)))).((....)).))))......))))))).))))))).(((.....................))).. ( -39.70) >DroYak_CAF1 3461 120 + 1 CUUGAAGGCCACUUUGGGCAUCAAUUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUCGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUCAACAACUCCAACAAGCUCAU ((((..(((((((..(((((((.....((......))((((.((((.....)))).((....)).))))......))))))).))))))).(((...........)))...))))..... ( -42.00) >DroAna_CAF1 3416 120 + 1 UUUGAAAGCCACCUUGGGCAUCAACCUGGGGCACACAUCCGAGGCUCUGAUGGCCAGUUCCCGCAUUGAAUCUCAGGUUCUCCAGUGGCCGGAGGGCAUCAAUAACUCCAACAAGCUAAU ((((...(((((..((((....(((((((((..((.((.((.((..(((.....)))..)))).))))..))))))))).))))))))).((((...........))))..))))..... ( -35.10) >consensus CUUAAAGGCCACUUUGGGCAUCAACUUGGGACACACCUCGGAGGCCUUGAUGGCCAGCUCCCGCAUCGAAUCUCAGGUGCUCCAGUGGCCAGAGGGCAUCAACAACUCCAACAAACUCAU .......(((.((((((.(((.....((((...(((((.(((((((.....)))).((....))......))).))))).))))))).)))))))))....................... (-35.00 = -35.32 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:22 2006