Locus 7779

Sequence ID 2L_DroMel_CAF1
Location 21,932,707 – 21,932,819
Length 112
Max. P 0.560008
window12474

overview

Window 4

Location 21,932,707 – 21,932,819
Length 112
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 92.82
Mean single sequence MFE -32.96
Consensus MFE -25.82
Energy contribution -25.66
Covariance contribution -0.16
Combinations/Pair 1.14
Mean z-score -1.51
Structure conservation index 0.78
SVM decision value 0.05
SVM RNA-class probability 0.560008
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21932707 112 + 22407834
CAGGAAAAUAAAUUGAAAGUGCUUCGAACGAAAAUUGACGAGCAGCCACUGC-------CGAUGUCAAGGUUUGAGUCGGAGGCGAAGUUGGAAGUCCGAGUUUGUCUGAUUGGCGAGA
...................((((((((.((((..((((((.((((...))))-------...))))))..))))..))))(((((((.((((....)))).)))))))....))))... ( -31.00)
>DroSec_CAF1 221131 111 + 1
CAGGAAAAUAAAUUGAAAGUGCCUCGAACGAAAAUUGACGAGCAGCCACUGC-------UGAUGUCAAGGUUUGAGUCGGAGGCGAAGUUGG-AGUCCGAGUUUGUCUGAUUGGCGAGA
..(((.....((((.....((((((((.((((..((((((..((((....))-------)).))))))..))))..)).)))))).))))..-..)))...((((((.....)))))). ( -33.30)
>DroSim_CAF1 165825 111 + 1
CAGGAAAAUAAAUUGAAAGUGCCUCGAACGAAAAUUGACGAGCAGCCACUGC-------UGAUGUCAAGGUUUGAGUCGGAGGCGAAGUUGG-AGUCCGAGUUUGUCUGAUUGGCGAGA
..(((.....((((.....((((((((.((((..((((((..((((....))-------)).))))))..))))..)).)))))).))))..-..)))...((((((.....)))))). ( -33.30)
>DroEre_CAF1 191075 118 + 1
CAGGAAAAUAAAUUGAAAGUGCUUCGGACGAAAAUUGACGAGCAGCCACUGCUUGCCACUGAUGUCAAGGUUCGAGUCGGAGGCGAAGUUGA-AGUCCGAGUUUGUCUGAUUGGGGCGA
............(..(...((((((.((((((..(((((((((((...)))))).........)))))..)))..))).))))))...)..)-.((((.((((.....)))).)))).. ( -34.70)
>DroYak_CAF1 181905 111 + 1
CAGGAAAAUAAAUUGAAAGUGCUUCGAACGAAAAUUGACGAGCAGCCACUGC-------UGAUGUCAAGGUUCGAGUCGGAGGCAAGGCUGG-AGUCCGAGUUUGUCUGACUGGGGAGA
(((..(.(((((((.....((((((((.((((..((((((..((((....))-------)).))))))..))))..)).)))))).(((...-.)))..))))))).)..)))...... ( -32.50)
>consensus
CAGGAAAAUAAAUUGAAAGUGCUUCGAACGAAAAUUGACGAGCAGCCACUGC_______UGAUGUCAAGGUUUGAGUCGGAGGCGAAGUUGG_AGUCCGAGUUUGUCUGAUUGGCGAGA
..(((.....((((.....((((((((.((((..((((((.((((...))))..........))))))..))))..)).)))))).)))).....)))...((((((.....)))))). (-25.82 = -25.66 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:43 2006