Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,925,939 – 21,926,059 |
Length | 120 |
Max. P | 0.939610 |
Location | 21,925,939 – 21,926,059 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.61 |
Mean single sequence MFE | -32.90 |
Consensus MFE | -15.56 |
Energy contribution | -16.51 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.48 |
Mean z-score | -2.15 |
Structure conservation index | 0.47 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939610 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21925939 120 - 22407834 CUAAUAGCGAUAUGGUGUCAAUAUCGUAAUAUGUUUCCAUUUUAACCAGGUGAAAUCGGUGGCAAUGUUGCGAUGGCGGCACAUCGAUUGCUAAACGUCAGAAUAAAAAUGUAUUACUCC ....(((((((...(((((..(((((((((((((..((((((((......)))))).))..)).)))))))))))..)))))....)))))))........................... ( -34.40) >DroSec_CAF1 213469 120 - 1 CUAAUAGCGAUAUGGUGUCAAUAUCGUAAUAUGUUUCCAUUUUAACCAGGUGAAAUCGGUGCCAAUGUUGCGAUGGCGGCACAUCGAUUGCUAAACGUCAGAGUAAAAAUGUAUUACUCC ....(((((((...(((((..(((((((((((....((((((((......)))))).)).....)))))))))))..)))))....))))))).......((((((.......)))))). ( -36.20) >DroSim_CAF1 157805 120 - 1 CUAAUAGCGAUAUGGUGUCAAUAUCGUAAUAUGUUUCCAUUUUAACCAGGUGAAAUCGGUGGCAAUGUUGCGAUGGCGGCACAUCGAUUGCUAAACGUCAGAGUAAAAAUGUAUUACUCC ....(((((((...(((((..(((((((((((((..((((((((......)))))).))..)).)))))))))))..)))))....))))))).......((((((.......)))))). ( -38.70) >DroEre_CAF1 180532 120 - 1 UUAAUAGCGACAUGGUGUCGAUAUCGGGAUAUGUUUUCAUUUCAACCGGGUGAGGUCGGAGGCAAUGUUGCGAUGGCGGCUCAUCGAUUGCUAAACGUCAGAGAAAAAAUGUAUUACUCC ....(((((((((((.((((.(((((.(((((((((((((((((......)))))).)))))).))))).))))).)))))))).).))))))........................... ( -32.70) >DroYak_CAF1 175988 102 - 1 UUAAUAGCGAUACGGUGUCGAUGUCGUUAUAUGUUU-----UCAACGGGGUGAAAUCGGAGGCGAUGUUGCGACGGCAGC-------------AUCGUCAGAGUAAAAAUGCAUUACUCC ...(((((((((((....)).)))))))))......-----.....(((((((.......(((((((((((....)))))-------------))))))...(((....))).))))))) ( -35.90) >DroAna_CAF1 155788 91 - 1 ------------------------CGUGCCGCAUUUCCAUUUCAACUGA-----AUUGAAGUUGAUGGCGCGAUGGCGACGUAUCGAUUGUCAAAUGUCAGUGUAAAAUUUUAUUACUUC ------------------------(((((((((((((...(((....))-----)..)))).)).))))))).((((((((...)).))))))........................... ( -19.50) >consensus CUAAUAGCGAUAUGGUGUCAAUAUCGUAAUAUGUUUCCAUUUCAACCAGGUGAAAUCGGAGGCAAUGUUGCGAUGGCGGCACAUCGAUUGCUAAACGUCAGAGUAAAAAUGUAUUACUCC ......................(((((((((((((.((((((((......)))))).)).)))).)))))))))((((.................)))).((((((.......)))))). (-15.56 = -16.51 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:42 2006