Locus 7776

Sequence ID 2L_DroMel_CAF1
Location 21,924,840 – 21,924,944
Length 104
Max. P 0.513652
window12470

overview

Window 0

Location 21,924,840 – 21,924,944
Length 104
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.04
Mean single sequence MFE -17.92
Consensus MFE -13.44
Energy contribution -14.04
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.75
SVM decision value -0.04
SVM RNA-class probability 0.513652
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21924840 104 + 22407834
------------ACUU----GGGCGUUGAAAUGUAUACAGGAAAAUAUUUUUGAAAUUGCAUAAAGCCCAGACAUCAAUAAAAUAAAUAACAAUAAUUUUGCAAAAUGCCCAUAAAUCCC
------------...(----(((((((..........((((((....))))))...(((((......................................)))))))))))))........ ( -15.96)
>DroSec_CAF1 212337 104 + 1
------------ACUU----GGGCGUUGAAAUGUAUACAGGAAAAUAUUUUUGAAAUUGCAUAAAGCCCAGACAUCAAUAAAAUAAAUAACAAUAAUUUUGCAAAAUGCCCAUAAAUCCC
------------...(----(((((((..........((((((....))))))...(((((......................................)))))))))))))........ ( -15.96)
>DroSim_CAF1 156634 104 + 1
------------ACUU----GGGCGUUGAAAUGUAUACAGGAAAAUAUUUUUGAAAUUGCAUAAAGCCCAGACAUCAAUAAAAUAAAUAACAAUAAUUUUGCAAAAUGCCCAUAAAUCCC
------------...(----(((((((..........((((((....))))))...(((((......................................)))))))))))))........ ( -15.96)
>DroEre_CAF1 178619 108 + 1
------------AAGUGGAGGGGCGUUGAAAUGUAUACAACAAAAUAUUUGUGAAAUUGCAUAAAGCCCAGACAUCAAUAAAAUAAAUAACAAUAAUUUUGCAAAAUGCCCAUAAAUCCC
------------....(((.((((((((.........))))......((((..(((((((.....))...(....)..................)))))..))))..)))).....))). ( -19.50)
>DroAna_CAF1 154880 116 + 1
AGUCUUGGCCAUACUU----GGGCGUUGAAAUGUAUGCAGCAAAAUAUUUUUGCAAUUGCACAGAGCCGAGACAUCAAUAAAAUAAAUAACAAUAAUUUUGCAAAAUGCCCAUAAAUCCA
.(((((((((......----..((((........)))).(((((.....))))).........).))))))))...........................((.....))........... ( -22.20)
>consensus
____________ACUU____GGGCGUUGAAAUGUAUACAGGAAAAUAUUUUUGAAAUUGCAUAAAGCCCAGACAUCAAUAAAAUAAAUAACAAUAAUUUUGCAAAAUGCCCAUAAAUCCC
....................(((((((..........((((((....))))))...(((((......................................))))))))))))......... (-13.44 = -14.04 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:39 2006