Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,921,799 – 21,921,897 |
Length | 98 |
Max. P | 0.919518 |
Location | 21,921,799 – 21,921,897 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 75.70 |
Mean single sequence MFE | -31.53 |
Consensus MFE | -20.09 |
Energy contribution | -19.96 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.23 |
Mean z-score | -1.95 |
Structure conservation index | 0.64 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21921799 98 + 22407834 UUGCCCUGGGGUUAGAUUGUGGGUGCCGGCGCUUCUGUUAUCCUUCGAUGCCAUUGUGGUAUUCUUGCCUCGAGG-GAUGGCCGUGGAUGCGUAGCUUA ..((((..............))))((..((((.(((((((((((((((((((.....))))........))))))-))))))...))).)))).))... ( -32.84) >DroSec_CAF1 209222 79 + 1 UUGCCCU----------UAUGGGUGCCGUCGCUUCUGGUAUCCUUCGAUGCCAUUGUGGUAUUCUUGCCUCGAGG----------GGAUGCGCAGCUUA ..((((.----------...))))((((((.(((((((((((....)))))))..(.((((....)))).)))))----------.)))).))...... ( -31.60) >DroSim_CAF1 153747 79 + 1 UUGCCCU----------UAUGGGUGCCGUCGCUUCUGGUAUCCUUCGAUGCCAUUGUGGUAUUCUUGCCUCGAGG----------GGAUGCGCAGCUUA ..((((.----------...))))((((((.(((((((((((....)))))))..(.((((....)))).)))))----------.)))).))...... ( -31.60) >DroYak_CAF1 170733 99 + 1 UUGCCCUGGGGUUACAUUGGGGGUGCCUGUGUUUCUGUUAUCCUGUGAUUGCAUUGUAGUAUUCCUGCCUUGAAGGGAUGGCCUCAGAUGCGCAGCUUC ..(((((.((......)).)))))((.(((((.(((((((((((.......((..((((.....))))..))..))))))))...))).)))))))... ( -30.10) >consensus UUGCCCU__________UAUGGGUGCCGGCGCUUCUGGUAUCCUUCGAUGCCAUUGUGGUAUUCUUGCCUCGAGG__________GGAUGCGCAGCUUA ..((((..............))))((.(.(((.(((((((((....)))))).(((.((((....)))).)))............))).)))).))... (-20.09 = -19.96 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:34 2006