Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,919,600 – 21,919,712 |
Length | 112 |
Max. P | 0.754558 |
Location | 21,919,600 – 21,919,712 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.38 |
Mean single sequence MFE | -47.48 |
Consensus MFE | -42.31 |
Energy contribution | -42.87 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.41 |
Structure conservation index | 0.89 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21919600 112 - 22407834 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA-A-------UCGCGAUUGCUGGGCGCCGUGCUCGAGCCGCACAG .............(((((..(..((.((((((...((((((((...((.(((((((((....))))))...))).)-)-------.))))).))).))))))))..).....)))))... ( -46.20) >DroSec_CAF1 207058 112 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA-A-------UCGCGAUUGCCGGGCGCCGUGCUCGACCCGCACAG ...................((((((.(.(((..(..((..((((((..((((((((((....))))))..(((((.-.-------.))))).))))))))))))..)..)))))))))). ( -49.00) >DroSim_CAF1 151582 119 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA-AUCGCGAAUCGCGAUUGCCGGGCGCCGUGCUCGACCCGCACAG .............(((((..(..((((...))))..)((((.((...(((((((((((....)))))).((((..(-((((((...)))))))..))))))))).)).)))))))))... ( -52.30) >DroEre_CAF1 173205 113 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGAAA-------UCGCGAUUGCCGGGCGCCGUGCUCGAGCCGCACAG ...................((((((...(.((((.(((..((((((..((((((((((....))))))..(((((...-------.))))).))))))))))..))).))))))))))). ( -49.10) >DroYak_CAF1 168778 112 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGAGCGUCGCGCUCUUGGCGAAUGGCGGAUGUCAUCAUUCGCGA-A-------UCGCGAUUGCCGGGCGCCGUGCUCGAGCCGCACAG ...................((((((...(.((((((((..((((((.(.((((.(.(((((((....))))))).)-.-------)))).).....))))))..))))))))))))))). ( -47.50) >DroAna_CAF1 149990 106 - 1 UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA-U-------UCGCGAUUACCAGGCGCCUCGCAC------CACAG ....................((((((((((((.(((.((((((....(.(((((((((....))))))...))).)-.-------.))))))))).))))).)))))))------..... ( -40.80) >consensus UUGUCGAUAAAUUUGCGGAUGUGCGAGUGUCUUGUGCGUCGCGCUCUUGGCGGAUGGCGGAUGCCAUCACUCGCGA_A_______UCGCGAUUGCCGGGCGCCGUGCUCGAGCCGCACAG .............((((((((..((((...))))..))))((((((..((((((((((....))))))..((((((.........)))))).))))))))))...........))))... (-42.31 = -42.87 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:33 2006