Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,918,737 – 21,918,857 |
Length | 120 |
Max. P | 0.872912 |
Location | 21,918,737 – 21,918,857 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.06 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -26.15 |
Energy contribution | -26.65 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.86 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21918737 120 + 22407834 GAAAAUCAUCGGGCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA ........(((((((((((.......)))(((((.(((..(((..(((((....)))))....)))....))))))))...........)).))))))..((((........)))).... ( -31.60) >DroSec_CAF1 206227 120 + 1 GAAAAUCAUCGGGCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA ........(((((((((((.......)))(((((.(((..(((..(((((....)))))....)))....))))))))...........)).))))))..((((........)))).... ( -31.60) >DroSim_CAF1 150513 120 + 1 GAAAAUCAUCGGGCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA ........(((((((((((.......)))(((((.(((..(((..(((((....)))))....)))....))))))))...........)).))))))..((((........)))).... ( -31.60) >DroEre_CAF1 172389 120 + 1 GAAAAUCAUCGGCCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAACCCGACAGAUACAUCCCAUUGUCAAUA ........((((..(((((.......)))(((((.(((..(((..(((((....)))))....)))....))))))))...........))...))))..((((........)))).... ( -24.00) >DroYak_CAF1 167788 120 + 1 GAAAAUCAUCGUCCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACAUCAGCCCGACAGAUACAUCCCAUUGUCAAUA ..........(((.(((((((...((((.((...(((.((((...(((((....))))).)))))))...)).)))).((....))...)))))))))).((((........)))).... ( -31.50) >DroAna_CAF1 149414 120 + 1 GAAAAUCAUCGGGCGGACUGAAAAGCAGCGCAAAAUGUGUUGAAAAUUGCACUGGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA ........((((((((.........((((((.....))))))..........(((((((((.........))))).)))).........)).))))))..((((........)))).... ( -32.50) >consensus GAAAAUCAUCGGGCGGGCUGAAAACGAGCGCGAAAUGUGUUGAAAAUUGCACAAGCAAUGCGAUCAUAAAGCAUUCGCCAUUAAUGACACCAGCCCGACAGAUACAUCCCAUUGUCAAUA .......(((...(((((((.........(((((.(((..(((..(((((....)))))....)))....))))))))((....))....)))))))...)))................. (-26.15 = -26.65 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:32 2006