| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 2,218,145 – 2,218,258 |
| Length | 113 |
| Max. P | 0.772165 |
| Location | 2,218,145 – 2,218,258 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.87 |
| Mean single sequence MFE | -36.70 |
| Consensus MFE | -29.26 |
| Energy contribution | -29.94 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2218145 113 - 22407834 UAGCUGCAGAGAUAGUUGCCAUUGGGGGAUACGGAAAGUCCCUGCACUGUCUUUGUUUGAAUGCUUUGACAGGUGGCGUUACUCUCUGCGAAAGGGAUUUAAA---GAUUUCA----UCA ....((((((((....((((((..((((((.......))))))...(((((...((......))...)))))))))))....))))))))...(..(((....---)))..).----... ( -38.70) >DroSim_CAF1 2647 113 - 1 UAGCUGCAGAGAUAGUUGCCAUUGGGGGACACGGAAAGUCCCUGCACUGUCUUUGUUUGAAUGCUUUGGCAGGUGGCGUUACUCUCUGCGAAAGGGAUUUCAA---GAUUUCA----UCA ....((((((((....((((((..((((((.......))))))...(((((...((......))...)))))))))))....))))))))...(..(((....---)))..).----... ( -39.90) >DroEre_CAF1 2632 113 - 1 UAGCUGCACAGAUAGUUGCCAUUGGGGGAAACUGAAAGUCCCUGCACUGUCUUUGUUUGAAUGCUUUGGCAGGUGGCGUUGCUCUCUGCGAAAGGGAUUUCAA---GAUAUCA----UCA .....(((.(((((((.((.....(((((.........)))))))))))))).)))((((((.((((.((((..(((...)))..)))).)))).)..)))))---.......----... ( -32.30) >DroYak_CAF1 2634 113 - 1 UAGCUGCAGAGAUAGUUGCCAUUGGGCGACACUGAAAGCCCUUGCACUGUCUUUGUUUGAAUGCUUUGGCAGGUGGCGUUGCUCUCUGCGAAAGGGAUUUCAA---GUUAUUA----UCA ((((((((((((((((.((....((((..........))))..))))))))))))).(((((.((((.((((..(((...)))..)))).)))).)..)))))---))))...----... ( -40.40) >DroAna_CAF1 2577 119 - 1 UAACUGCAGAGGUAGUUGCCAUUGGGGGACACCGAUAAGCCCUGAACCGUUUUCGUUUGGAUGCUCUGGCAGGUGGCGUUGCUCUCUGCGAAAAA-AUUUAAAUGAGAUUACAGAGAUUA ....((((((((((((..(((((((......)))))..(((..((..(((((......))))).)).))).))..))..))).)))))))....(-((((...((......)).))))). ( -32.20) >consensus UAGCUGCAGAGAUAGUUGCCAUUGGGGGACACGGAAAGUCCCUGCACUGUCUUUGUUUGAAUGCUUUGGCAGGUGGCGUUGCUCUCUGCGAAAGGGAUUUCAA___GAUUUCA____UCA ....((((((((....((((((..((((((.......))))))...(((((...((......))...)))))))))))....)))))))).............................. (-29.26 = -29.94 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:21 2006