Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,911,560 – 21,911,677 |
Length | 117 |
Max. P | 0.925937 |
Location | 21,911,560 – 21,911,677 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -32.35 |
Consensus MFE | -26.83 |
Energy contribution | -27.38 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -2.59 |
Structure conservation index | 0.83 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925937 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21911560 117 - 22407834 AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC ........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....)))))))))))((.((((....)))).)).)---))))))..)))))).. ( -34.60) >DroSec_CAF1 199863 117 - 1 AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC ........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....)))))))))))((.((((....)))).)).)---))))))..)))))).. ( -34.60) >DroSim_CAF1 144143 117 - 1 AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC ........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....)))))))))))((.((((....)))).)).)---))))))..)))))).. ( -34.60) >DroEre_CAF1 164003 117 - 1 AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC ........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....)))))))))))((.((((....)))).)).)---))))))..)))))).. ( -34.60) >DroYak_CAF1 161061 116 - 1 AAAUCGCUUACAACGGUUCGUCUCCG-CAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG---AAGGCGUUCUUGCAUC ....(((((.(..(((.......)))-..(((((((((((((..(((((.(((.(((((.....)))))...))).)))))))))))))...)))))...)---.))))).......... ( -23.90) >DroAna_CAF1 142386 120 - 1 AAAUCGUUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAACUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCAAAGGAGGAGGCGUUCUUGCAAC .......(((((..((..(((((((..(.(((((((((((((..(((((.(((.(((((.....)))))...))).)))))))))))))...)))))...)..)))))))..))))))). ( -31.80) >consensus AAAUCGCUUGCAUUGGUUCGUCUUCGUCAGUUAAUUUAAAACAUGUCAGACAACUCCGACAAGUUUGGACAAUUGAUUGACGUUUUAAAAGUUUAGCACAG___AAGGCGUUCUUGCAUC ........((((..((..((((((((((((((((((..((((.((((.((....)).)))).))))....))))))))))))........(.....).......))))))..)))))).. (-26.83 = -27.38 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:31 2006