| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,909,790 – 21,909,897 |
| Length | 107 |
| Max. P | 0.518055 |
| Location | 21,909,790 – 21,909,897 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.25 |
| Mean single sequence MFE | -38.43 |
| Consensus MFE | -32.74 |
| Energy contribution | -33.07 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.85 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21909790 107 - 22407834 GCUCGACGAUGGAUUAUGAAGCUUCCGUUCG-UUGCAAGGAAGCGCAGCGAUGCUAGCGUCAUCGUCAUCAAGCUGGACAUCGCAUCGCGUUGUUUACUCGAGUCCGA------------ ((((((((((((((......((((((.....-......))))))...(((((((((((..............))))).))))))))).))))).....))))))....------------ ( -37.14) >DroSec_CAF1 198346 107 - 1 GCUCGACGAUGGAUUAUGAAGCUUCCGUUCG-UUGCAAGGAAGCGCAGCGAUGCCAGCGUCAUCGUCAUCAAGCUGGACAUCGCAUCGCGUUGUUUACUCGAGUCCGA------------ ((((((((((((((......((((((.....-......))))))...(((((((((((..............))))).))))))))).))))).....))))))....------------ ( -39.44) >DroSim_CAF1 142388 107 - 1 GCUCGACGAUGGAUUAUGAAGCUUCCGUUCG-UUGCAAGGAAGCGCAGCGAUGCCAGCGUCAUCGUCAUCAAGCUGGUCAUCGCAUCGCGUUGUUUACUCGAGUCCGA------------ ((((((((((((((......((((((.....-......))))))...(((((((((((..............))))).))))))))).))))).....))))))....------------ ( -39.44) >DroEre_CAF1 162282 107 - 1 GCUCGACGAUGGAUUAUGAAGCUUCCGCUCG-UUGCAAGGAAGCGCAGCGAUGCCAGCGUCAUCGUCAUCAAGCUGGACAUCGCAUCGCGUUGUUUACUCGAGUCCAA------------ ((((((((((((((......((((((((...-..))..))))))...(((((((((((..............))))).))))))))).))))).....))))))....------------ ( -40.84) >DroYak_CAF1 158744 107 - 1 GCUCGACGAUGGAUUAUGAAGCUUCCGCUUG-UUGCCAGGAAGCGCAGCGAUGCAAGCGUCAUCGUCUUCACGCUGGACAUCGCAUCGCGUUGUUUAUUCGAGCCCAA------------ ((((((((((((((......((((((((...-..))..))))))...(((((((.(((((.(......).))))).).))))))))).))))).....))))))....------------ ( -39.70) >DroAna_CAF1 140240 120 - 1 GUUUGACGAUGGAUUAGGAAGCAUCCCCCGGACUGAAAGCAAGUGCAGCGAUACCAGCGUCAUCGUCAUCAAGUUGGACAACGCAUCGCGCUGUUUACUCGAUCCCGGGCCAUCCUGCCA .......(((((....(((....)))(((((..((((((((.((((.(((...(((((..............)))))....)))...)))))))))..)))...))))))))))...... ( -34.04) >consensus GCUCGACGAUGGAUUAUGAAGCUUCCGCUCG_UUGCAAGGAAGCGCAGCGAUGCCAGCGUCAUCGUCAUCAAGCUGGACAUCGCAUCGCGUUGUUUACUCGAGUCCGA____________ ((((((((((((((......((((((((......))..))))))...(((((((((((..............))))).))))))))).))))).....))))))................ (-32.74 = -33.07 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:30 2006