Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,909,669 – 21,909,759 |
Length | 90 |
Max. P | 0.619102 |
Location | 21,909,669 – 21,909,759 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.47 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -19.91 |
Energy contribution | -19.72 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.33 |
Mean z-score | -1.48 |
Structure conservation index | 0.79 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.619102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21909669 90 - 22407834 AUGUCAGUCAAAGAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU--AUAUAGCGAUCGAA----------------------------CGGCGGGGGACAAACUCGGUCAUG .(((((((......))))))).....(((((((((.......(((((((...--.)))))))......----------------------------.....(....)....))))))))) ( -23.90) >DroSec_CAF1 198225 90 - 1 AUGUCAGUCAAAGAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU--AUAUAGCGAUCGAA----------------------------CGGCGGGGGACAAACUCGGUCAUG .(((((((......))))))).....(((((((((.......(((((((...--.)))))))......----------------------------.....(....)....))))))))) ( -23.90) >DroSim_CAF1 142267 90 - 1 AUGUCAGUCAAAGAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU--AUAUAGCGAUCGAA----------------------------CGGCGGGGGACAAACUCGGCCAUG .(((((((......))))))).....(((((((((.......(((((((...--.)))))))......----------------------------.....(....)....))))))))) ( -26.60) >DroEre_CAF1 162161 90 - 1 AUGUCAGUCAAAAAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU--AUAUAGCGAUCGAA----------------------------CUGCGGGGGACAAACUUGGUCGUG .(((((((......))))))).....(((((((((....(((((.....)))--))...(((......----------------------------.))).(....)....))))))))) ( -21.40) >DroYak_CAF1 158623 90 - 1 AUGUCAGUCAGAGAAUUGGCAACAUACAUGACCGAUGAAAUAUGUUAUACAU--AUAUAGCCAUCGAC----------------------------CGGCGGGGGACAAACUCGGUCGUG .(((((((......))))))).....(((((((((....(((((.....)))--))...(((......----------------------------.))).(....)....))))))))) ( -27.00) >DroAna_CAF1 140040 120 - 1 AUGUCAGUCAUAGAAUUGGCAACGGACAUAUUCGAUGAAAUAUGUUGGGCAUACAUAUAGAAAUCGAACGAAGCGGAGAUGCGACGGCGACGGCGACGGCGAGGGACAAUCUUGGUCAUG (((((.((((......))))....))))).((((((...((((((.......))))))....))))))....((.(((((....(..((.((....)).))..)....))))).)).... ( -29.20) >consensus AUGUCAGUCAAAGAAUUGGCAACGGACAUGGCCGAUGAAAUAUGUUAUACAU__AUAUAGCGAUCGAA____________________________CGGCGGGGGACAAACUCGGUCAUG .(((((((......))))))).....(((((((((.......(((((((......))))))).......................................(....)....))))))))) (-19.91 = -19.72 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:29 2006