Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,907,517 – 21,907,621 |
Length | 104 |
Max. P | 0.641800 |
Location | 21,907,517 – 21,907,621 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 92.45 |
Mean single sequence MFE | -21.27 |
Consensus MFE | -19.29 |
Energy contribution | -19.60 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -1.43 |
Structure conservation index | 0.91 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21907517 104 - 22407834 UGCACACGCCACUUCUUGCACAAAAUCCUUGCAACCCCAGUGGCAGCCUCUUAGACCUGCCACGCCC-CAUUGGCAACGCAACCGCCCACGCCCACGCCCACGCC (((....((((((..(((((.........)))))....)))))).............(((((.....-...)))))..)))...((....((....))....)). ( -23.00) >DroSec_CAF1 196112 98 - 1 UGCACACGCCACUUCUUGCACAAAAUCUUUGCAACCCCAGUGGCAGCCUCUUAGACCUGCCACGCCC-CUUUGGCAACGCAACCGCCCUCGC------CCACGCC (((....((((((..(((((.........)))))....)))))).............(((((.....-...)))))..)))...........------....... ( -22.10) >DroSim_CAF1 140139 98 - 1 UGCACACGCCACUUCUUGCACAAAAUCCUUGCAACCCCAGUGGCAGCCUCUUAGACCUGCCACGCCC-CUUUGGCAACGCAACCGCCCUCGC------CCACGCC (((....((((((..(((((.........)))))....)))))).............(((((.....-...)))))..)))...........------....... ( -22.10) >DroEre_CAF1 160060 99 - 1 UGCACACACCGCUUCUUGCACAAAAUCCUUGCAACCCCGGUGGCAGCCUCUUAGACCUGCCACGCCCCCUAUGCCAACGCAACCGCCCACGC------CCACGCC .((.......((...(((((.........))))).....(((((((..........)))))))))......(((....)))...))......------....... ( -17.90) >consensus UGCACACGCCACUUCUUGCACAAAAUCCUUGCAACCCCAGUGGCAGCCUCUUAGACCUGCCACGCCC_CUUUGGCAACGCAACCGCCCACGC______CCACGCC .((....((((....(((((.........))))).....(((((((..........)))))))........))))...((....))................)). (-19.29 = -19.60 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:28 2006