Locus 7762

Sequence ID 2L_DroMel_CAF1
Location 21,896,317 – 21,896,437
Length 120
Max. P 0.670363
window12448

overview

Window 8

Location 21,896,317 – 21,896,437
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.69
Mean single sequence MFE -28.27
Consensus MFE -24.14
Energy contribution -24.07
Covariance contribution -0.06
Combinations/Pair 1.13
Mean z-score -1.86
Structure conservation index 0.85
SVM decision value 0.29
SVM RNA-class probability 0.670363
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21896317 120 - 22407834
UACGGAUUUUUGUUUCGAUGUGGCACUUUAAAAUAUUUUCAUUUUAAUUCCACUGCACGUCGCUCAUUGAAACAGCCUCUGUGGCACCACUGGCUCUUCAAACAAACCGACAUUUUGACG
..(((.....(((((((((((((....(((((((......)))))))..)))).((.....))..)))))))))(((...(((....))).)))............)))........... ( -28.60)
>DroSec_CAF1 186436 120 - 1
UACGGAUUUUUGUUUCGAUGUGGCAUUUAAAAAUAUUUUCAUUUUAAUUCCACUGCACGUCGCUCAUUGAAACAGCUUCUGUGGCACCACUGGCUCUUCAAACAAACCGACAUUUUGACG
..(((.....(((((((((((((...((((((.........))))))..)))).((.....))..)))))))))(((...(((....))).)))............)))........... ( -25.30)
>DroSim_CAF1 130158 120 - 1
UACGGAUUUUUGUUUCGAUGUGGCAUUUAAAAAUAUUUUCAUUUUAAUUCCACUGCACGUCGCUCAUUGAAACAGCUUCUGUGGCACCACUGGCUCUUCAAACAAACCGACAUUUUGACG
..(((.....(((((((((((((...((((((.........))))))..)))).((.....))..)))))))))(((...(((....))).)))............)))........... ( -25.30)
>DroEre_CAF1 150061 120 - 1
UACGGAUUUUGGUUGCGAUGUGGCAUUUAAAUAUAUUUUCAUUUUAAUUCCAUUGCACGUCGCUCAUCGAAGCAGCCUCUGUGGAACCACUGGCUCUUCAAACAAACCGACAUUUUGACG
..((((..((((((((((((((.((.(((((...........)))))......)))))))))).....((((.((((...(((....))).)))))))).....))))))...))))... ( -33.90)
>consensus
UACGGAUUUUUGUUUCGAUGUGGCAUUUAAAAAUAUUUUCAUUUUAAUUCCACUGCACGUCGCUCAUUGAAACAGCCUCUGUGGCACCACUGGCUCUUCAAACAAACCGACAUUUUGACG
..(((......((((((((((((...((((((.........))))))..)))).((.....))..))))))))((((...(((....))).))))...........)))........... (-24.14 = -24.07 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:19 2006