| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,895,327 – 21,895,447 |
| Length | 120 |
| Max. P | 0.548949 |
| Location | 21,895,327 – 21,895,447 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.28 |
| Mean single sequence MFE | -44.98 |
| Consensus MFE | -30.11 |
| Energy contribution | -29.40 |
| Covariance contribution | -0.71 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21895327 120 - 22407834 AAGAGGGAAGGUAUGUGAGCCAAGUCGCAGGUCCUGUGGUCGGGAAUCGGAAGAAAGAGGCUAAUGCCCCUGGGCAACCUAUUUGGGGGAUGUGACUGGAGCCUUUUCAUGCUGACCUCU .(((((...((((((.((((((.((((((..((((.((.(((((..((....))....(((....)))))))).)).((.....)))))))))))))))...)))..))))))..))))) ( -47.10) >DroSec_CAF1 185162 120 - 1 AAUAGGGAAGGUAUGUGAGCCAAGUCGCAGGUCCUGUGGUCGGGAAUCGGUAGAAAGAGGCUUAUGCCCCUGGGCAACCUAUUUGGGGGAUGGGUCUGGAGUCUUUUCAUGCUGACCUCU .((((((......(((((......)))))..))))))((((((.(......(((...((((((((.((((.((....)).....)))).))))))))....))).....).))))))... ( -42.50) >DroSim_CAF1 128893 120 - 1 AAUAGGGAAGGUAUGUGAGCCAAGUCGCAGGUCCUGUGGUCGGGAAUCGGAAGAAAGAGGCUUAUGCCCCUGGGCAACCUAUUUGGGGGAUGGGUCUGGAGUCUUUUCAUGCUGACCUCU .((((((......(((((......)))))..))))))((((((..((..(((((...((((((((.((((.((....)).....)))).))))))))....)))))..)).))))))... ( -46.00) >DroEre_CAF1 149139 120 - 1 AAGAGGGGAGGAAUGUGAGCCAACUCGCAGGUCCUGUGGUCAGGAACCGGGAGAAAGAGGCUGAUGCCCCUGGGCAACUUAUGUGCGGGUUGCGACUGGAGCCUCUUCAUGCCGACCUCU .(((((.......((((((....))))))(((((((....)))).)))((.(..(((((((((.(((.((((.(((.....))).))))..))).)...))))))))..).))..))))) ( -48.90) >DroYak_CAF1 142755 120 - 1 AAGAGGGAAUGUAUGUGAGCCAAGUCGCAGGUCCUGUGGUCAGGAAUCGGAAGAAAAAGGCUGAUGCCCCUGGGCAACCUAUUUGCGGGAUGCGACUGGAGCCUUUUCAUGCCGACCUCU .(((((....(((((.((((((.((((((..(((((..(..(((..((....))..........((((....)))).)))..)..))))))))))))))...)))..)))))...))))) ( -48.50) >DroAna_CAF1 129349 120 - 1 AAUAGGGAGGGUAUGCCCGCCAUGUCGCAGGUUCUCGCAUCCGGAAUCGGCAGAAAGAGACUUAUUCCCCGGGGCACCUUUUUCCCAGUCCUGGACUCCAGUUUCUUCAUCCGUUUCUGC ....(((((((....)))(((........))))))).....(((((.(((.(..((((((((......(((((((............))))))).....))))))))..)))).))))). ( -36.90) >consensus AAGAGGGAAGGUAUGUGAGCCAAGUCGCAGGUCCUGUGGUCGGGAAUCGGAAGAAAGAGGCUUAUGCCCCUGGGCAACCUAUUUGCGGGAUGGGACUGGAGCCUUUUCAUGCUGACCUCU ....((((.....(((((......)))))..))))(.((((((...((....))((((((((..((((....)))).(((......)))..........))))))))....)))))).). (-30.11 = -29.40 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:18 2006