Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 2,207,836 – 2,207,994 |
Length | 158 |
Max. P | 0.974973 |
Location | 2,207,836 – 2,207,956 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.44 |
Mean single sequence MFE | -43.60 |
Consensus MFE | -27.52 |
Energy contribution | -28.00 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.44 |
Mean z-score | -1.32 |
Structure conservation index | 0.63 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2207836 120 - 22407834 UGCAUACGGACAUCUGGCAGGUGGUUAUCAUGUUUGCCUCCGUUGUGGUUGUGGCCAUUCUGGCCACCUGCUACAUCACCGACCUAGAUGACUUCUUCGAAAGCCUGGUGGACGGCGGAC .((...((..((((.(((.((.(((..........))).))(.((((((.((((((.....))))))..)))))).)..(((...(((.....))))))...))).))))..)))).... ( -42.00) >DroSec_CAF1 16017 120 - 1 UGCAUACGGACAUCUGGCAGGUGGCCAUCAUGUUUGCCUCUGUUGUGGUUGUGGCCAUCCUGGCCACCUGCUACAUCCCCGACGUGGAUGACUUCUUCGAAGGCCUGCAGGCCGGCGGAC .((...((((....(((((((((((((..(((.(..(..((.....))..)..).)))..)))))))))))))(((((.......))))).....))))..((((....)))).)).... ( -48.90) >DroSim_CAF1 19715 120 - 1 UGCAUACGGACAUCUGGCAGGUGGCCAUCAUGUUUGCCUCCGUUGUGGUUGUGGCCAUCCUGGCCACCUGCUACAUCCCCGACGUGGAUGACUUCUUCGAAGGCCUGCAGGCCGGCGGAC .((...((((....(((((((((((((..(((.(..(..((.....))..)..).)))..)))))))))))))(((((.......))))).....))))..((((....)))).)).... ( -50.50) >DroEre_CAF1 15270 120 - 1 UGCACACGGACAUCUGGCAGGUGGCAAUCAUGUUUGUGUCCGUAAUGGUUGUGGCCAUUCUUGCCACCUGCUACAUCACCGACCUGGAUGCCUUCUACGAAAGUCUGGAGGUCGGGGGAC ......(((.....(((((((((((((.(((....)))...(.((((((....)))))))))))))))))))).....))).((((...((((((.((....))..)))))))))).... ( -47.30) >DroYak_CAF1 16640 120 - 1 UGCAUACGGAUAUCUGGCAGGUGGCGAUCAUGUUUGUUUCCGUCCUGGUUGUGGCCAUCCUAGCCACCUGCAACAUCACCGACAUGGGUGAAUUCUUCGAAAGUCUGGAGGCCGGAGGAC ......(((....)))(((((((((....(((.(..(..((.....))..)..).)))....)))))))))....(((((......))))).(((((((...(((....)))))))))). ( -40.70) >DroAna_CAF1 14159 120 - 1 UUCAUACGGAUGUCUGGCAAACAGUGAUCAUGUUCUUUUCAGUUAUAGUAGUUACUAUUCUGGGAACUAUUUAUGCCACUGGCCUGGACUCCCUUUUUGAUGACUUGGAUGCGAGGGAUC .......(((.(((((((...(((((..((((...((..(((..(((((....))))).)))..)).....)))).)))))))).)))))))......(((..((((....))))..))) ( -32.20) >consensus UGCAUACGGACAUCUGGCAGGUGGCCAUCAUGUUUGCCUCCGUUGUGGUUGUGGCCAUCCUGGCCACCUGCUACAUCACCGACCUGGAUGACUUCUUCGAAAGCCUGGAGGCCGGCGGAC ......(((..((.(((((((((((((..(((.(..(..((.....))..)..).)))..))))))))))))).))..))).(((.(....((((..(....)...))))..).)))... (-27.52 = -28.00 + 0.48)
Location | 2,207,876 – 2,207,994 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.08 |
Mean single sequence MFE | -39.77 |
Consensus MFE | -27.83 |
Energy contribution | -28.17 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.43 |
Mean z-score | -1.68 |
Structure conservation index | 0.70 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 2207876 118 - 22407834 ACCAACUUAUCAC--CUGCAGGGCGGUCUCAAGGCAGUGGUGCAUACGGACAUCUGGCAGGUGGUUAUCAUGUUUGCCUCCGUUGUGGUUGUGGCCAUUCUGGCCACCUGCUACAUCACC ........(((((--(((((((...((((....(((....)))....)))).))).)))))))))................(.((((((.((((((.....))))))..)))))).)... ( -42.80) >DroSec_CAF1 16057 91 - 1 ACCAA-----------------------------CAGUGGUGCAUACGGACAUCUGGCAGGUGGCCAUCAUGUUUGCCUCUGUUGUGGUUGUGGCCAUCCUGGCCACCUGCUACAUCCCC ((((.-----------------------------...))))......(((....(((((((((((((..(((.(..(..((.....))..)..).)))..)))))))))))))..))).. ( -35.80) >DroSim_CAF1 19755 118 - 1 ACCAACUUAUCAC--CUGCAGGGCGGACUCAAGGCAGUGGUGCAUACGGACAUCUGGCAGGUGGCCAUCAUGUUUGCCUCCGUUGUGGUUGUGGCCAUCCUGGCCACCUGCUACAUCCCC .......((((((--.(((.(((....)))...))))))))).....(((....(((((((((((((..(((.(..(..((.....))..)..).)))..)))))))))))))..))).. ( -44.60) >DroEre_CAF1 15310 118 - 1 UCCCGUUACUUAC--CUGCAGGGCGGCCUCAAGGCGGUGGUGCACACGGACAUCUGGCAGGUGGCAAUCAUGUUUGUGUCCGUAAUGGUUGUGGCCAUUCUUGCCACCUGCUACAUCACC .(((((.......--..)).)))..(((....)))(((((((....(((....)))(((((((((((.(((....)))...(.((((((....))))))))))))))))))..))))))) ( -44.10) >DroYak_CAF1 16680 118 - 1 UCCCUUGAUUCAU--UUGCAGGGCGGCCUUAAGGCGGUGGUGCAUACGGAUAUCUGGCAGGUGGCGAUCAUGUUUGUUUCCGUCCUGGUUGUGGCCAUCCUAGCCACCUGCAACAUCACC .((((((......--...))))).)(((....)))(((((((....(((....)))(((((((((....(((.(..(..((.....))..)..).)))....)))))))))..))))))) ( -44.20) >DroAna_CAF1 14199 120 - 1 ACUAAAAUAUCCUUUUUUUAGGGAGGCUUAAAAGCUGUGGUUCAUACGGAUGUCUGGCAAACAGUGAUCAUGUUCUUUUCAGUUAUAGUAGUUACUAUUCUGGGAACUAUUUAUGCCACU .........(((((.....)))))((((....))))(((((.......(((..(((.....)))..)))..(((((...(((..(((((....))))).)))))))).......))))). ( -27.10) >consensus ACCAACUUAUCAC__CUGCAGGGCGGCCUCAAGGCAGUGGUGCAUACGGACAUCUGGCAGGUGGCCAUCAUGUUUGCCUCCGUUGUGGUUGUGGCCAUCCUGGCCACCUGCUACAUCACC .........................(((....))).((((((....(((....)))(((((((((((..(((.(..(..((.....))..)..).)))..)))))))))))..)))))). (-27.83 = -28.17 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:20 2006