Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,893,231 – 21,893,323 |
Length | 92 |
Max. P | 0.500000 |
Location | 21,893,231 – 21,893,323 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 83.75 |
Mean single sequence MFE | -26.36 |
Consensus MFE | -12.92 |
Energy contribution | -13.80 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.10 |
Mean z-score | -2.41 |
Structure conservation index | 0.49 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21893231 92 - 22407834 AAAGGUGUUCGGGCCGUUUGCCGUAAU--------------------GC--CGGGAUGUAAAAAAGACCAGCAGAAGGCAUAAAAACUAAACA---UUUUCAAAAAAACAAAUAAAA .((((((((..(......((((....(--------------------((--.((..(.......)..)).)))...))))......)..))))---))))................. ( -20.60) >DroSec_CAF1 183069 114 - 1 AAAGGUGUUCGGGUCGUUUGCCGUAAUUGGCGACAGCCGCUUAAUGCGC--CGGGAUGUAAAAAAGACCAGCAGAAGGCAUAAAAACUAAACAACGUUUUCAA-AAAACAAAUAAAA ...(.((((..(...(((.((((....))))))).(((((.....))((--.((..(.......)..)).))....))).......)..)))).)((((....-.))))........ ( -24.30) >DroSim_CAF1 126803 113 - 1 AAAGGUGUUCGGGUCGU-UGCCGUAAUUGGCGACAGCCGCUUAAUGCGC--CGGGAUGUAAAAAAGACCAGCAGAAGGCAUAAAAACUAAACAACGUUUUCAA-AAAACAAAUAAAA ...(.((((..(...((-(((((....))))))).(((((.....))((--.((..(.......)..)).))....))).......)..)))).)((((....-.))))........ ( -28.10) >DroEre_CAF1 147020 116 - 1 AAAGGUGUUCGGGUCGUUUGCCGUAAUUGGCGACAGGCGCUUAAUGCGCCGCGGGAUGUAAAAAACACCAACAAAAGGCAUAAAAACUAAACAACAUUUUCAA-AAAACAAAUAAAA ...((((((((..((((((((((....))))))..(((((.....)))))))))..)).....))))))..................................-............. ( -27.70) >DroYak_CAF1 140685 113 - 1 UAAUGGGUUCAGGUCGUUUGCCGUAAUUGGCGACAGCCGCUUAAUGCGCCCCGGGAUGUAAAAAAGACUGGGAAAAGGCAUAAAAACUGAA---CAUGGUCAA-AAAACAAAUAAAA ......((((((...(((.((((....))))))).(((((.....))..(((((..(.......)..)))))....))).......)))))---)........-............. ( -31.10) >consensus AAAGGUGUUCGGGUCGUUUGCCGUAAUUGGCGACAGCCGCUUAAUGCGC__CGGGAUGUAAAAAAGACCAGCAGAAGGCAUAAAAACUAAACAACAUUUUCAA_AAAACAAAUAAAA .....((((.((......(((((((...((((.....))))...))).....((..(.......)..)).......))))......)).))))........................ (-12.92 = -13.80 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:15 2006