| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,891,165 – 21,891,276 |
| Length | 111 |
| Max. P | 0.532915 |
| Location | 21,891,165 – 21,891,276 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.80 |
| Mean single sequence MFE | -27.53 |
| Consensus MFE | -7.70 |
| Energy contribution | -7.78 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.28 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21891165 111 + 22407834 GCCGCGGAUGAAAGAAACGCGA---UCAU------UUCCGAUCAACUGCUGAUGGGAAACCGUGGAGAAAAUAAGUCCAAGGGCACUACCAAAAAAGUCGGUUUUUCCCAGUGGCUUAAA (((((((((........((((.---...(------((((.((((.....)))).))))).))))..........))))..(((....(((.........)))....))).)))))..... ( -33.67) >DroSec_CAF1 180927 111 + 1 GCCGCGGAUGAAAAACACGAGA---UCAU------UUCUGAUCAACUGCUGACGGGAAACCGUGGGGAAAAUAAGUCCAAAGGCACUAGUAAAAAAGUCAGCUUAUCCCAAUGGUUUAAA ((((.((((((.........((---(((.------...)))))....((((((((....))(((.(((.......))).....)))..........))))))))))))...))))..... ( -31.70) >DroSim_CAF1 124574 111 + 1 GCCGCGGAUGAAAAACACGAGA---UCAU------UUCUGAUCAACUGCUGACGGGAAGCCGUGGGGAAAAUAAGUCCAAAGGCACUAGCAAAAAAGUCAGCUUAUCCCAAUGGUUUAAA ((((.((((((.........((---(((.------...)))))....((((((((....))(((.(((.......))).....)))..........))))))))))))...))))..... ( -29.20) >DroEre_CAF1 144094 114 + 1 GUCGAGGAUAAUAAGGACGAGAAGUUAAU------UUGUGAUCAACUAAAGAUGGGAAACCAAGGCGAAAAUAAGUCUAAAGGCACAAAUGAAAAAGUCUGCUUAUCACAAUGGUUUAAA ......(((((...((((.........((------(((((.((.........(((....)))((((........))))...)))))))))......))))..)))))............. ( -24.36) >DroYak_CAF1 137795 114 + 1 GUCGAGGAUGAUAAGGACGAGGAGCAUAU------UUGUGAUCAAAUAAAAACGGGAAAUAAUAAUGAAAACGAGUCUAAGGGCAAAAACAAAAAUGUCAGCUUAUCCCAAUGGUUUAAA .....((((.((..(((..((..((((.(------((((.............((.................)).(((....)))....))))).))))...))..)))..)).))))... ( -15.83) >DroAna_CAF1 124564 120 + 1 GUGGAGGACGAAAGUGAAGCCGCGGAUGUGGUGCCACAAAAUCAAGUAGAGAUUGAAAGUAUUUUGGAGGAUCAGACUGAAGUCAAAUACAAAAGGGAUAGCCUUUUGCAGUGGUUCAAG ((((...((....))...(((((....))))).))))....((((.......))))............(((((((((....))).....(((((((.....)))))))...))))))... ( -30.40) >consensus GCCGAGGAUGAAAAAGACGAGA___UCAU______UUCUGAUCAACUACAGACGGGAAACCGUGGGGAAAAUAAGUCCAAAGGCACAAACAAAAAAGUCAGCUUAUCCCAAUGGUUUAAA ((((.((((((........................................((((....))))...........(((....)))..................))))))...))))..... ( -7.70 = -7.78 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:11 2006