Locus 7756

Sequence ID 2L_DroMel_CAF1
Location 21,887,145 – 21,887,252
Length 107
Max. P 0.717913
window12439

overview

Window 9

Location 21,887,145 – 21,887,252
Length 107
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 87.27
Mean single sequence MFE -23.05
Consensus MFE -20.16
Energy contribution -20.48
Covariance contribution 0.31
Combinations/Pair 1.06
Mean z-score -1.55
Structure conservation index 0.87
SVM decision value 0.39
SVM RNA-class probability 0.717913
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21887145 107 + 22407834
CAAAAACGCAAACAAACCCAAACCACACACGCACACACACCAGCAAACAGCGCUGCAAGUGCUGAAU-UACCGGCACUUCUUCUUCUUCGACGGCGUAAACGGCAGAG
......................((....((((........((((.......)))).((((((((...-...))))))))..............))))....))..... ( -20.40)
>DroSec_CAF1 177157 107 + 1
CAAAAACGCAAACAAACCCAAACCCCACACGCACACACGCCAGCAAACAGCGCUGCAAGUGCUGAAC-UACCGGCACUUCUUCUUCUUCGACGGCGUCAUCGGCAGAG
..............................((....(((((.(((........)))((((((((...-...)))))))).............))))).....)).... ( -24.10)
>DroSim_CAF1 120612 106 + 1
CAAAAACGCAAACAAAC-CAAACCCCACACGCACACACGCCAGCAAACAGCGCUGCAAGUGCUGAAC-UACCGGCACUUCUUCUUCUUCGACGGCGUCAUCGGCAGAG
.................-............((....(((((.(((........)))((((((((...-...)))))))).............))))).....)).... ( -24.10)
>DroYak_CAF1 131394 94 + 1
CAAAAAUGCAAACAAAC--------AACACGCACACACGCCUGCAAACAGCGCUGCAUGUGCUGAAUUUACCGGCACUUC------UUCGACGGCGUCAUCGGUUGAC
................(--------(((.((.....(((((((((........)))).((((((.......))))))...------......)))))...)))))).. ( -23.60)
>consensus
CAAAAACGCAAACAAAC_CAAACCCCACACGCACACACGCCAGCAAACAGCGCUGCAAGUGCUGAAC_UACCGGCACUUCUUCUUCUUCGACGGCGUCAUCGGCAGAG
..............................((....(((((.(((........)))((((((((.......)))))))).............))))).....)).... (-20.16 = -20.48 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:10 2006