| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,886,328 – 21,886,433 |
| Length | 105 |
| Max. P | 0.672162 |
| Location | 21,886,328 – 21,886,433 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 76.99 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -14.59 |
| Energy contribution | -15.70 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.672162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21886328 105 - 22407834 AGUAGCCCAGUUAUGAGAACGAUGAAGAUCGUAACUGUGUAACUAUGCAACAUAAACCUGAAUCGCAGACAGUUAUCUG--------AAUUAAUCUGAACAGGCGGAAAGAA-----A (((.((.(((((((((...(......).))))))))).)).)))............((((.....(((((((....)))--------......))))..)))).........-----. ( -20.70) >DroSec_CAF1 176367 103 - 1 AGUAGCCCAGUUAUGAACACGAUGAAGAUCGGAACUGUGUAACUAUGCAACAUAAAU---------------UAAUCUGAUGGGGCGGAUUAAUCUGAACCGGCAGAAAGGGUAAAUA ....(((((((((((....((((....))))......))))))).............---------------...((((.(((..((((....))))..))).))))..))))..... ( -27.30) >DroSim_CAF1 119810 103 - 1 AGUAGCCCAGUUAUGAGCACGAUGAAGAUCGGAACUGUGUAACUACGCAACAUAAAU---------------UAAUCUGAUGGGGCGGAUUAAUCUGAACAGGCAGAAAGGGUAAAUA ....((((..(((((....((((....))))....(((((....))))).)))))..---------------...((((...(..((((....))))..)...))))..))))..... ( -26.00) >consensus AGUAGCCCAGUUAUGAGCACGAUGAAGAUCGGAACUGUGUAACUAUGCAACAUAAAU_______________UAAUCUGAUGGGGCGGAUUAAUCUGAACAGGCAGAAAGGGUAAAUA .((.((..(((((((....((((....))))......)))))))..)).)).....................(((((((......))))))).((((......))))........... (-14.59 = -15.70 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:10 2006