Locus 7754

Sequence ID 2L_DroMel_CAF1
Location 21,885,709 – 21,885,828
Length 119
Max. P 0.777498
window12437

overview

Window 7

Location 21,885,709 – 21,885,828
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.57
Mean single sequence MFE -46.55
Consensus MFE -36.01
Energy contribution -35.47
Covariance contribution -0.55
Combinations/Pair 1.35
Mean z-score -1.92
Structure conservation index 0.77
SVM decision value 0.55
SVM RNA-class probability 0.777498
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21885709 119 - 22407834
CGCGGGCAAUCUUCUCGGCAGCGGCUUUUGCCUUCAGCGAUUUGCGCCCUGUGCCUGUCGCUCUUCGCGAAAGCCUCCGGCGGGAAACUCCCCGAAGAACCCAUACA-AGCAGCUGAACA
...(((...(((((((((....(((((((((....((((((..((((...))))..))))))....))))))))).)))).(((......)))))))).))).....-............ ( -44.40)
>DroSec_CAF1 175750 119 - 1
CGCGGGCAACCUUCUCGGCAGCGGCUUUUGCCUUCAGCGAUUUGCGCCCUGUGCCUGUCGCUCUUCGCGAAAGCUUCCGGCGGGAAACUCCCCGAAGAACCCAUACA-AGCAGCUGAGAA
...((....)).(((((((.(((((((((((....((((((..((((...))))..))))))....)))))))))..(..((((......))))..)..........-.)).))))))). ( -49.50)
>DroSim_CAF1 119193 119 - 1
CGCGGGCAAUCUUCUCGGCAGCGGCUUUUGCCUUCAGCGAUUUGCGCCCUGUGCCUGUCGCUCUUCGCGAAAGCUUCCGGCGGGAAACUCCCCGAAGAACCCAUACA-AGCAGCUGAGAA
............(((((((.(((((((((((....((((((..((((...))))..))))))....)))))))))..(..((((......))))..)..........-.)).))))))). ( -45.40)
>DroEre_CAF1 138215 119 - 1
CGCGGGCAAUCUUCUCGGCAGCGGCUCUUGCCUUCAGCGAUUAGCUCCCUGCUCUUGUCGCUCUUCGCGAAAGCCUCCGGCGGGAAACUCCGCGAAGAACCCAUUCA-AGCAACUGAACG
...(((...(((((.(((....((((.((((....((((((.(((.....)))...))))))....)))).)))).)))(((((....)))))))))).))).((((-......)))).. ( -42.10)
>DroYak_CAF1 128660 119 - 1
CGCGGGCAAUCUUCUCGGCAGCGGCUUUUGCCUUCAGCGAUUUGCGACCUGUGCUUGUCGCUCUUCGCGAAAGCCUCGGGCGGGAAACUCCCCGAAGAACCCAUUCA-AGCAACUGAACA
...(((...(((((......(.(((((((((....((((((..(((.....)))..))))))....))))))))).)(((.((....)).)))))))).))).((((-......)))).. ( -46.60)
>DroAna_CAF1 120768 120 - 1
CGCCAACAGUCUCUUUGGCAGGGGCUCCUGUUUCGAGCGGAUAGCGCAGUGUGCCUGCCGCCCCAAGCAGCUGCCCCGGCCGCAGGACUCUUCGAAGAAGCCAUUCGGAACCGCUGCGCC
.(((((........))))).(((((..((((((.(.((((.(((.((.....))))))))).).))))))..)))))(((.((((.....((((((.......))))))....))))))) ( -51.30)
>consensus
CGCGGGCAAUCUUCUCGGCAGCGGCUUUUGCCUUCAGCGAUUUGCGCCCUGUGCCUGUCGCUCUUCGCGAAAGCCUCCGGCGGGAAACUCCCCGAAGAACCCAUACA_AGCAGCUGAACA
..((((.....((((((.(.(.(((((((((....((((((..((((...))))..))))))....))))))))).).).))))))....)))).......................... (-36.01 = -35.47 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:09 2006