Locus 7752

Sequence ID 2L_DroMel_CAF1
Location 21,880,510 – 21,880,630
Length 120
Max. P 0.990889
window12435

overview

Window 5

Location 21,880,510 – 21,880,630
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.83
Mean single sequence MFE -26.42
Consensus MFE -23.98
Energy contribution -24.38
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.91
SVM decision value 2.24
SVM RNA-class probability 0.990889
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21880510 120 - 22407834
UGAUUCCUCGCGUUGAUUUUCAGUUCAUUCUCGCUAAUAAUUCGCCUGACAGAUAUUCAGGCAUAAUUAGAGAUUAAUUGUUCUACUCAUAAUUGGUCUUGGCUUGAUAUUUUUGGACAU
......................(((((.((..(((........((((((.......)))))).......((((((((((((.......)))))))))))))))..))......))))).. ( -25.80)
>DroSec_CAF1 170486 120 - 1
UGAUUUCUCGCGUUGAUUUUCAGUUCAUUCUCGCUAAUAUUUCGCCUGACAGAUAUUCAGGCAUAAUUAGAGAUUAAUUGUUUUGCUCAUAAUUGGUCUUGGCUUGAUAUUUUUGGACAU
(((..((.......))...)))(((((.((..(((........((((((.......)))))).......((((((((((((.......)))))))))))))))..))......))))).. ( -26.80)
>DroSim_CAF1 113477 120 - 1
UGAUUUCUCGCGUUGAUUUUCAGUUCAUUCUCGCUAAUAUUUCGCCUGACAGAUAUUCAGGCAUAAUUAGAGAUUAAUUGUUUUGCUCAUAAUUGGUCUUGGCUUGAUAUUUUUGGACAU
(((..((.......))...)))(((((.((..(((........((((((.......)))))).......((((((((((((.......)))))))))))))))..))......))))).. ( -26.80)
>DroEre_CAF1 131656 120 - 1
UGAUUCCGCGCGUUGAUUUUCAUUUCAUUCUCGCUAAUAAUUCGCCUGACAGAUAUUCAGGCAUAAUUAGAGAUUAAUUGUUCUACUCAUAAUUGGUCUUGGCUUGAUAUUUUUGGACAU
....((((((.(.(((........)))..).))).......((((((((.......)))))).......((((((((((((.......)))))))))))).....)).......)))... ( -26.40)
>DroAna_CAF1 116251 120 - 1
UGUCUUUUUUGGUUGAUUUUCAUUUCAUUCUCGCUAAUAAUUCGCCUGACAGAUAUUCAGGCAUAAUUAGAGAUUAAUUGUUCUAUUCAUAAUUGGUCUUGGCUUGAUAUUUUUGGACAU
(((((.....(..(((........)))..)..(((........((((((.......)))))).......((((((((((((.......)))))))))))))))...........))))). ( -26.30)
>consensus
UGAUUUCUCGCGUUGAUUUUCAGUUCAUUCUCGCUAAUAAUUCGCCUGACAGAUAUUCAGGCAUAAUUAGAGAUUAAUUGUUCUACUCAUAAUUGGUCUUGGCUUGAUAUUUUUGGACAU
..................(((((.....((..(((........((((((.......)))))).......((((((((((((.......)))))))))))))))..)).....)))))... (-23.98 = -24.38 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:07 2006