| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,876,331 – 21,876,436 |
| Length | 105 |
| Max. P | 0.566327 |
| Location | 21,876,331 – 21,876,436 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 94.21 |
| Mean single sequence MFE | -20.32 |
| Consensus MFE | -16.74 |
| Energy contribution | -16.90 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21876331 105 - 22407834 CAUUCGUAUAUGUCGUGGUAAAUAUGAGUUACA-UAUUGCUGCAGAAAUUUGACACAUGAUAUUUUGAAAAUUGUCUGCCAGCAAACAAACAAAAAGAAGAAUUAA .(((((((....(((((.....)))))..))).-..(((((((((((((((....((........)).))))).)))).))))))..............))))... ( -17.90) >DroSec_CAF1 167130 106 - 1 GAUUCGUAUAUGUCGUGGCAAAUAUGAGUUACAAUUCUGCUGCAGAAAUUUGACACAUGAUAUUUUGAAAAUUGUCUGCCAGCAAACAAACAAAAGGAAGAAUUAA (((((((((.(((....))).)))))))))..(((((((((((((((((((....((........)).))))).)))).)))).......(....)..)))))).. ( -22.70) >DroSim_CAF1 110124 105 - 1 GAUUCGUAUAUGUCGUGGCAAAUAUGAGUUACA-UUCUGCUGCAGAAAUUUGACACAUGAUAUUUUGAAAAUUGUCUGCCAGCAAACAAACAAAAGGAAGAAUUAA (((((((((.(((....))).)))))))))...-...((((((((((((((....((........)).))))).)))).)))))...................... ( -22.00) >DroEre_CAF1 127317 105 - 1 CAUUCGAAUAAGUCGUGGUAAAUAUGAGUUACA-UUCUGCUGCAGAAAUUUGACACAUGAUAUUUUGAAAAUUGUCUGCCAGCAAGCAAACAAAAAGAAGAAUUAC ..((((((...((((((.(((((.(((((....-....))).))...)))))...))))))..))))))..((((.(((......))).))))............. ( -18.60) >DroYak_CAF1 118513 104 - 1 CAUUCGUAUAUGUCAUGGUAUAUAUGAGUAACA-UUCUGCUGCAGAAAUUUGACACAUGAUAUUUUGAAAAUUGUCUGCCAGCAA-CAAACAAAAAGAAGAAUUAA .(((((((((((......)))))))))))....-...((((((((((((((....((........)).))))).)))).))))).-.................... ( -20.40) >consensus CAUUCGUAUAUGUCGUGGUAAAUAUGAGUUACA_UUCUGCUGCAGAAAUUUGACACAUGAUAUUUUGAAAAUUGUCUGCCAGCAAACAAACAAAAAGAAGAAUUAA .((((((((.(((....))).))))))))........((((((((((((((....((........)).))))).)))).)))))...................... (-16.74 = -16.90 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:04 2006