Locus 775

Sequence ID 2L_DroMel_CAF1
Location 2,207,646 – 2,207,760
Length 114
Max. P 0.934298
window1269

overview

Window 9

Location 2,207,646 – 2,207,760
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.80
Mean single sequence MFE -38.47
Consensus MFE -22.99
Energy contribution -24.13
Covariance contribution 1.14
Combinations/Pair 1.15
Mean z-score -1.93
Structure conservation index 0.60
SVM decision value 1.24
SVM RNA-class probability 0.934298
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2207646 114 - 22407834
CUACUGGACCUCGAUUACGGCGGUGCACCAGACUAUGGUGCAUCGCUACAUGUCCUUGCCCAACUUAAAAAUGGCCAGGACUUCCAUUGCCUUUUUUGUCCUCGGAU------CGAUCAU
......((..((((((..((((((((((((.....))))))))))))....(((((.(((............))).))))).......................)))------))))).. ( -38.80)
>DroSec_CAF1 15827 114 - 1
CUACUGGACCUCGUCUACGGCGGUGCACCAGACCAUGGUGCAUCGCUACAUGUCCUUGCCCAACUUGCAAAUGGCCAGGACAUCCAUUGCCUAUUUUGUCCUCGGAU------CGGUUAU
......((((..((((..((((((((((((.....))))))))))))..(((((((.(((............))).)))))))....................))))------.)))).. ( -41.30)
>DroSim_CAF1 19525 114 - 1
CUACUGGACCUCGCUUACGGCGGUGCACCAGACCAUGGUGCAUCGCUACAUGUCCUUGCCCAACUUGCAAAUGGCCAGGACAUCCAUUGCCUAUUUUGUCCUCGGAU------CAGUCAU
..(((((.((........((((((((((((.....))))))))))))..(((((((.(((............))).)))))))....................)).)------))))... ( -41.60)
>DroEre_CAF1 15080 114 - 1
CUACUGGACCUCAUUUACGGCGGUCAAUCAGACCAUGGUACAUCGGUAUAUGUCCUUGCCCAGCCUGCGGAUGGCCAGGACCUCCAUCGCCUACUUUGUCAUUGGAG------CGAGCAU
...((((...(((((..((((((((.....))))..........((((........))))..))).)..)))))))))..((((((..(.(......).)..)))))------.)..... ( -30.20)
>DroYak_CAF1 16450 114 - 1
CUACUGGACCUCCAUUGCGGCAGUGCACCAGACCAUGGUGCAUCGGUAUAUGUCGUUGCCCAACUUGCGGAUGGUCAGGACUUCCAUUGCCUACUUUGUCGUGGGAG------CGGUCAU
......((((.(..(..(((((((((((((.....)))))))).((((...(((.(((.(((.(.....).))).))))))......)))).....)))))..)..)------.)))).. ( -40.00)
>DroAna_CAF1 13963 120 - 1
UGGCUGGCUUUCUGUAAAUGCUGUGAACCCCACCAUGGUACAUCGGUAUAUGACCCUUCCUUCCCUAAAGAAGGCCAGGGCUGCGUUGGCGAUAUAUACUGUGGGAAGUGCCGGGUUCAU
...((((((((((.....(((((((........)))))))((.(((((((((.((((.(((((......)))))..)))).(((....))).)))))))))))))))).)))))...... ( -38.90)
>consensus
CUACUGGACCUCGAUUACGGCGGUGCACCAGACCAUGGUGCAUCGCUACAUGUCCUUGCCCAACUUGCAAAUGGCCAGGACUUCCAUUGCCUAUUUUGUCCUCGGAU______CGGUCAU
..................((((((((((((.....))))))))).......(((((.(((............))).))))).......)))............................. (-22.99 = -24.13 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:18 2006