Locus 7749

Sequence ID 2L_DroMel_CAF1
Location 21,875,307 – 21,875,407
Length 100
Max. P 0.721864
window12431

overview

Window 1

Location 21,875,307 – 21,875,407
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 95.79
Mean single sequence MFE -33.06
Consensus MFE -29.22
Energy contribution -29.22
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.88
SVM decision value 0.40
SVM RNA-class probability 0.721864
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21875307 100 + 22407834
UCACAACAGAGAAGAACCAACCCACGCACCGCACGCGAUUCGCCGGCGAGGGGCCUGCGGAGCAGCAAAUCCGCGGUGUCAACGGAAAAUGUCUUCGAAC
..........(((((......((..(((((((..((..(((((.(((.....))).)))))...))......)))))))....))......))))).... ( -32.10)
>DroSec_CAF1 166152 100 + 1
UCACAACAGAGAAGAACCAACCCACGCACCGCACGCGAUUCGCCGGCGAGGGGCCUGCGGAGCAGCAAAUCCGCGGUGUCAACGGAAAAUGUCUUCGAAC
..........(((((......((..(((((((..((..(((((.(((.....))).)))))...))......)))))))....))......))))).... ( -32.10)
>DroSim_CAF1 109131 100 + 1
UCACAACAGAGAAGAACCAACCCACGCACCGCACGCGAUUCGCCGGCGAGGGGCCUGCGGAGCAGCAAAUCCGCGGUGUCAACGGAAAAUGUCUUCGAAC
..........(((((......((..(((((((..((..(((((.(((.....))).)))))...))......)))))))....))......))))).... ( -32.10)
>DroEre_CAF1 126359 97 + 1
UCACAACAGAGAAGAACCAACCCACGCACCGCACGCAG---GUCGGCGAGGGGCCUGCGGCGCAGCAAAUCCGCGGUGUCAACGGAAAAUGUCUUCGAAC
..........(((((......((..(((((((.(((((---(((.......))))))))((...))......)))))))....))......))))).... ( -34.50)
>DroYak_CAF1 117570 97 + 1
UCACAACAGAGAAGAACCAACCCACGCACCGCACGCAG---GUCGGCGAGGGGCCUGCGGCGCAGCAAAUCCGCGGUGUCAACGGAAAAUGUCUUCGAAC
..........(((((......((..(((((((.(((((---(((.......))))))))((...))......)))))))....))......))))).... ( -34.50)
>consensus
UCACAACAGAGAAGAACCAACCCACGCACCGCACGCGAUUCGCCGGCGAGGGGCCUGCGGAGCAGCAAAUCCGCGGUGUCAACGGAAAAUGUCUUCGAAC
..........(((((......((..(((((((.(((.........)))..(((..(((......)))..))))))))))....))......))))).... (-29.22 = -29.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:03 2006