Locus 7748

Sequence ID 2L_DroMel_CAF1
Location 21,874,502 – 21,874,600
Length 98
Max. P 0.584988
window12430

overview

Window 0

Location 21,874,502 – 21,874,600
Length 98
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 84.87
Mean single sequence MFE -28.14
Consensus MFE -20.32
Energy contribution -21.08
Covariance contribution 0.76
Combinations/Pair 1.04
Mean z-score -1.66
Structure conservation index 0.72
SVM decision value 0.10
SVM RNA-class probability 0.584988
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21874502 98 - 22407834
------AUGCAACAUGUUGCAGGGAUCGCAGCAUGUGUACACGGGUGCGCUUAUGUAUGGGCAACGUCCGCAUUCCUGCAUCGAAC----AUUUUCAAAAUAUUAACA
------.((.((.(((((((((((((.((.((((((((((....))))))..))))..((((...)))))))))))))))....))----)).))))........... ( -28.90)
>DroSec_CAF1 165286 96 - 1
------AUGCAACAUGUUGCAGGGAUCGCAGCAUGUGUA--CGAGUGCGCUAAUGUAUGGGCAACGUCCGCAUUCCUGCAUCGAAC----AUUUUCAAAAUAUUAAUA
------((((((((((((((.......)))))))))...--.((((((((....))..((((...)))))))))).))))).....----.................. ( -27.40)
>DroSim_CAF1 108262 96 - 1
------AUGCAACAUGUUGCAGGGAUCGCAGCAUGUGUA--CGAGUGCGCUAAUGUAUGGGCAACGUCCGCAUUCCUGCAUCGAAC----AUUUUCAAAAUAUUAACA
------((((((((((((((.......)))))))))...--.((((((((....))..((((...)))))))))).))))).....----.................. ( -27.40)
>DroEre_CAF1 125596 106 - 1
ACCCAGCGGCAACAUGUUGCAGGCAUCGCAGCAUGUGUA--UGGGGGCGCUUAUAUUUGAGCAACGUCCGCAUUCCUGCAUCGAACAUAAAUUUACAAAAUAUUAACA
.....((((..(((((((((.......)))))))))..(--((.(((((((((....)))))...)))).)))..))))............................. ( -29.20)
>DroYak_CAF1 116719 106 - 1
ACCCAACGGCAACAUGUUGCGGGCAUCGCACCAUGUGUA--CGGGUGCGCUUUUAUUUGAGGAACGUCCGCAUUCCUGCAUCGAACGUUAAUUUACAAAAUUUUAACA
........(((......(((((((..((((((.((....--))))))))((((.....))))...)))))))....))).......(((((...........))))). ( -27.80)
>consensus
______AUGCAACAUGUUGCAGGGAUCGCAGCAUGUGUA__CGGGUGCGCUUAUGUAUGGGCAACGUCCGCAUUCCUGCAUCGAAC____AUUUUCAAAAUAUUAACA
........((((((((((((.......)))))))))......(((((((...((((.......)))).))))))).)))............................. (-20.32 = -21.08 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:02 2006