Locus 7747

Sequence ID 2L_DroMel_CAF1
Location 21,866,782 – 21,866,900
Length 118
Max. P 0.882994
window12429

overview

Window 9

Location 21,866,782 – 21,866,900
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.03
Mean single sequence MFE -40.28
Consensus MFE -32.12
Energy contribution -32.88
Covariance contribution 0.76
Combinations/Pair 1.09
Mean z-score -1.87
Structure conservation index 0.80
SVM decision value 0.92
SVM RNA-class probability 0.882994
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21866782 118 + 22407834
CCUCGA-ACUGCAAUCAG-CGGGUUUUUCGGAGGUGUAGGAGCAAGGCAGCGGCAACUCCUGCAACUGUUGCAGUUCCGACAGCUACCAGCAAAAUCAGCGGCUUAUGCUGUCCCAGAAA
..((((-(((((((.(((-(((.....)))....((((((((....((....))..)))))))).)))))))))))).((((((..((.((.......)))).....))))))...)).. ( -40.50)
>DroSec_CAF1 157688 119 + 1
ACUCGA-ACUGCAAUCAUCCGGGUUUUGCGGAGGUGUAGGAGCAAGGCAGCGGCAACUCCUGCAACUGUUGCAGUUGCGACUGCUACCAGCAAAAUCAGCGGCUUAUGCUGUCCCAGAAA
......-.(((..........((((((((...(((((((..((((.(((((.(((.....)))....)))))..))))..)))).))).)))))))).(((((....)))))..)))... ( -41.50)
>DroSim_CAF1 100827 119 + 1
ACUCGA-ACUGCAAUCAUCCGGGUUUUGCGGAGGUGUAGGAGCAAGGCAGCGGCAACUCCUGCAACUGUUGCAGUUGCGACUGCUACCAGCAAAAUCAGCGGCUUAUGCUGUCCCAGAAA
......-.(((..........((((((((...(((((((..((((.(((((.(((.....)))....)))))..))))..)))).))).)))))))).(((((....)))))..)))... ( -41.50)
>DroEre_CAF1 116306 120 + 1
CCUCCAUUCUGCAAUCCUCCGUGUUUUGCGGAGGUGUAGGAGCAAGGCAGCGGCAAUUUCUGCAACUGUUGCAGUUGCGACUGCUACCAGCAAAAUCAACAGCUUAUGCUGUCCCAAAAA
......(((((((..(((((((.....))))))))))))))((..((.(((((.....((.(((((((...)))))))))))))).)).)).......(((((....)))))........ ( -42.70)
>DroYak_CAF1 108310 112 + 1
CCUC--------GAUCAUCCGAGUUUAGCGAAGGUGUAGGAGCAAGACAGCGGCUAUUUCUGCAACUGUUGCAGUUGCGACUGCUACCAGCAAAAUCAACAGCUUAAGCUGUCCCUGAAA
.(((--------(......))))....((...(((((((..(((((((((..((.......))..)))))....))))..)))).))).))....((((((((....)))))...))).. ( -35.20)
>consensus
CCUCGA_ACUGCAAUCAUCCGGGUUUUGCGGAGGUGUAGGAGCAAGGCAGCGGCAACUCCUGCAACUGUUGCAGUUGCGACUGCUACCAGCAAAAUCAGCGGCUUAUGCUGUCCCAGAAA
.....................((((((((...(((((((..(((((((((..(((.....)))..)))))....))))..)))).))).)))))))).(((((....)))))........ (-32.12 = -32.88 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:01 2006