Locus 7746

Sequence ID 2L_DroMel_CAF1
Location 21,864,273 – 21,864,380
Length 107
Max. P 0.765926
window12428

overview

Window 8

Location 21,864,273 – 21,864,380
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.38
Mean single sequence MFE -18.66
Consensus MFE -2.64
Energy contribution -2.28
Covariance contribution -0.36
Combinations/Pair 1.45
Mean z-score -1.66
Structure conservation index 0.14
SVM decision value 0.52
SVM RNA-class probability 0.765926
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21864273 107 + 22407834
GAAACAAACAGAAACC----GAAAACAAAAACAAA-----AAGCAGGUGCAUGGAGGUGCUGAAAAU--GC-AUGG-AAAUGCUUUCUGGUCAGAGAGUAUCACAAAUGUAGACAUGAAA
........(((..(((----(....).........-----..((....)).....))).)))....(--((-((..-..(((((((((....))))))))).....)))))......... ( -17.90)
>DroSec_CAF1 152040 106 + 1
GAAACAAACAGAUACC----GAAAACAAAAACAAA-----AAGCAGGUGCACAGAGGUGCUGAAAAU--GC-AUGG-AAAUCCUUUCUGAUCUGAGAUUAUAA-AAAUGUAGACAUGAAA
........(((((.(.----((((...........-----..(((...((((....))))......)--))-..((-....)))))).)))))).........-................ ( -16.60)
>DroSim_CAF1 98378 107 + 1
GAAACAAACAGAUACC----GAAAACAAAAACAAA-----AAGCAGGUGCACGGAGGUGCUGAAAAU--GC-AUGG-AAAUCCUUUCUGAUCUGAGAUUAUAACAAAUGUAGACAUGAAA
........(((((.(.----((((...........-----..(((...((((....))))......)--))-..((-....)))))).)))))).......................... ( -16.80)
>DroEre_CAF1 113868 101 + 1
GAAACAAACAAAAUCC----GAAAAC------AAA-----AAGCAGGUGCACGGAGGUGAUGAAAAU--GC-AUGG-AAAUGCUUUCAGAUCAGGGAGUAUCACAAAUGUAGACAUGAAA
........((...(((----(...((------...-----......))...))))..))(((....(--((-((..-..(((((..(......)..))))).....)))))..))).... ( -16.90)
>DroAna_CAF1 101328 116 + 1
GAAACAAACAAAAAGCCUGUGAAACGAAAUACAAAGGUAACAACAGGUGAAAGGUGGGUGGAAAAAUUUGCCAAAAAAAACGGUUUUAGUUUAAGGA---UAA-AUGUGUAUCCUUGAUU
(((((.........((((((...((...........))....))))))....((..(((......)))..))..........)))))...(((((((---((.-.....))))))))).. ( -25.10)
>consensus
GAAACAAACAGAAACC____GAAAACAAAAACAAA_____AAGCAGGUGCACGGAGGUGCUGAAAAU__GC_AUGG_AAAUGCUUUCUGAUCAGAGAGUAUAACAAAUGUAGACAUGAAA
..........................................(((...((((....)))).......................((((......))))..........))).......... ( -2.64 =  -2.28 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:00 2006