Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,864,135 – 21,864,233 |
Length | 98 |
Max. P | 0.983797 |
Location | 21,864,135 – 21,864,233 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 96.22 |
Mean single sequence MFE | -21.26 |
Consensus MFE | -20.00 |
Energy contribution | -20.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.94 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21864135 98 - 22407834 UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGCAACAAAAACAGCAGCCGUCUGCAAACUCAGUAAAAUCAACAAAAAUGAACGGCAG ..((((.((((((....))))))((((((((.........(....).......((((....))))....))))...))))............)))).. ( -20.10) >DroSec_CAF1 151902 98 - 1 UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACGCAGGCAACAAAAACAGCAGUCGUCUGCAAACUCAGUAAAAUCAACAAAAAUGAACGGCAG ..((((.((((((....))))))((((((((......((((((.((..........)).))))))....))))...))))............)))).. ( -22.50) >DroSim_CAF1 98240 98 - 1 UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGCAACAAAAACAGCAGUCGUCUGCAAACUCAGUAAAAUCAACAAAAAUGAACGGCAG ..((((.((((((....))))))((((((((.........(....).......((((....))))....))))...))))............)))).. ( -21.10) >DroEre_CAF1 113732 98 - 1 UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGCAACAAAACCAGCAGCCGUCUGCAAACUCAGCAAAAUCAACAAAACUGAACGGCAG ..((((((((((.........(((.............)))(....)..)))).((((....)))).......))....(((.......))).)))).. ( -20.92) >DroYak_CAF1 106593 96 - 1 UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGUAACAAAA--AGCAGCCGUCUGCAAACUCAGCAAAAUCAACAAAACUGAACGGCAG ..((((((((((..((((...((...((((........))))...)))))--)..)))))))(((.......)))..................))).. ( -21.70) >consensus UCGCCGGCGGUUAAUUUUAAUUGGAUUCUGACAAAACCCAGGCAACAAAAACAGCAGCCGUCUGCAAACUCAGUAAAAUCAACAAAAAUGAACGGCAG ..((((.((((((....))))))((((((((.........(....).......((((....))))....))))...))))............)))).. (-20.00 = -20.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:59 2006