Locus 7744

Sequence ID 2L_DroMel_CAF1
Location 21,863,976 – 21,864,075
Length 99
Max. P 0.997915
window12426

overview

Window 6

Location 21,863,976 – 21,864,075
Length 99
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.19
Mean single sequence MFE -27.56
Consensus MFE -25.14
Energy contribution -26.10
Covariance contribution 0.96
Combinations/Pair 1.10
Mean z-score -2.51
Structure conservation index 0.91
SVM decision value 2.96
SVM RNA-class probability 0.997915
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21863976 99 + 22407834
-------------------UCUUGGCACAUAAUAAU--UUGAUGCCUUUUGAUCUUGGCCUCGGCUAUUGUUGUGGACUUGGCGUGUUUUUAAUUUAAAUCCUGCGCCUGUCAGCGUAAU
-------------------.....((.(((((((((--((((.(((..........))).))))..)))))))))(((..((((((..((((...))))..).))))).))).))..... ( -27.00)
>DroSec_CAF1 151722 120 + 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAUUUUUGAUGCCUUUUGAUCUUGGCCUCGGCUAUUGUUGUGGACUUGGCGUGUUUUUAAUUUAAAUCCUGCGCCUGUCAGCGUAAU
...............................(((((..((((.(((..........))).))))..))))).((.(((..((((((..((((...))))..).))))).))).))..... ( -22.50)
>DroSim_CAF1 98079 101 + 1
-------------------UCUUGGCACAUAACAAUUUUUGAUGCCUUUUGAUCUUGGCCUCGGCUAUUGUUGUGGACUUGGCGUGUUUUUAAUUUAAAUCCUGCGCCUGUCAGCGUAAU
-------------------.....((.(((((((((..((((.(((..........))).))))..)))))))))(((..((((((..((((...))))..).))))).))).))..... ( -31.10)
>DroEre_CAF1 113568 101 + 1
-------------------UCUUGGCACAUAACAAUUUUUGAUGCCUUUUGAUCUUGGCCUCGGCUAUUGUUGUGGACUUGGCGUGUUUUUAAUUUAAAUCCUGCGCCUGUCAGCGUAAU
-------------------.....((.(((((((((..((((.(((..........))).))))..)))))))))(((..((((((..((((...))))..).))))).))).))..... ( -31.10)
>DroYak_CAF1 106429 101 + 1
-------------------UCUUGGCUUAUAACGAUUUUUGAUGCCUUUUGAUCUUGGCCCCGGCUAUUGUUGUGGACUUGGCGUGUUUUUAAUUUAAAUCCUGCGCCUGUCAGCGUAAU
-------------------.....((((((((((((..(((..(((..........)))..)))..)))))))))(((..((((((..((((...))))..).))))).))))))..... ( -26.10)
>consensus
___________________UCUUGGCACAUAACAAUUUUUGAUGCCUUUUGAUCUUGGCCUCGGCUAUUGUUGUGGACUUGGCGUGUUUUUAAUUUAAAUCCUGCGCCUGUCAGCGUAAU
........................((.(((((((((..((((.(((..........))).))))..)))))))))(((..((((((..((((...))))..).))))).))).))..... (-25.14 = -26.10 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:58 2006