Locus 7743

Sequence ID 2L_DroMel_CAF1
Location 21,863,809 – 21,863,918
Length 109
Max. P 0.772676
window12425

overview

Window 5

Location 21,863,809 – 21,863,918
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.92
Mean single sequence MFE -42.88
Consensus MFE -35.02
Energy contribution -35.30
Covariance contribution 0.28
Combinations/Pair 1.06
Mean z-score -1.65
Structure conservation index 0.82
SVM decision value 0.53
SVM RNA-class probability 0.772676
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21863809 109 - 22407834
CGAAAAACUUUUACCAGCGUCGACGGCGGCGAAACGGAAACGGAAAUCGACGCGCAAAAGGUUGCAGGUGUCAUGUGACAAGGUCG-----------GUGUGGUGGUGGCGGUGGUGGUC
..........((((((.((((.((.((.((....((....))...((((((..((((....))))...((((....))))..))))-----------)))).)).)))))).)))))).. ( -39.40)
>DroSec_CAF1 151482 120 - 1
CGAAAAACUUUUACCAGCGUCGACGGCGGCGAAACGGAAACGGAAAUCGACGCGCAAAAGGUUGCAGGUGUCAUGUGACAAGGUCGGGGGCCUGUGGGUGUGGUGUUGGCGGUGGUGGUC
..........((((((.(((((((((((.(((..((....))....))).))).((...(.(..(((((.((....(((...))).)).)))))..).).)).)))))))).)))))).. ( -45.10)
>DroSim_CAF1 97901 120 - 1
CGAAAAACUUUUACCAGCGUCGACGGCGGCGAAACGGAAACGGAAAUCGACGCGCAAAAGGUUGCAGGUGUCAUGUGACAAGGUCGGGGGCCUGUGGGUGUGGUGUUGGCGGUGGUGGUC
..........((((((.(((((((((((.(((..((....))....))).))).((...(.(..(((((.((....(((...))).)).)))))..).).)).)))))))).)))))).. ( -45.10)
>DroEre_CAF1 113390 120 - 1
CGAAAAACUUUUGCCAGCGUCGACGGCGGCGAAACGGAAACGGAAAUCGACGCGCAAAAGGUUGCAGGUGUCAUGUGACAAGGUCGGGGUCCUGUGGGUGUGGUGGUGGCGGUGGUGGUC
..........(..(((.((((.((.((.(((..(((....)(((..(((((..((((....))))...((((....))))..)))))..))).))...))).)).)))))).)))..).. ( -44.50)
>DroYak_CAF1 106251 120 - 1
CGAAAAACUUUUACCAGUGUCGACGGCGGCGAAACGGAAACGGAAAUCGACGCGCAAAAGGUUGCAGGUGUCAUGUGACAAGGUCGGGGGCCUGUGGGUGUGGUGGUGGCGGUGGUGGUC
..........((((((.((((.((.((..(((..((....))....))).(((((...(((((.(...((((....))))......).)))))....))))))).)))))).)))))).. ( -40.30)
>consensus
CGAAAAACUUUUACCAGCGUCGACGGCGGCGAAACGGAAACGGAAAUCGACGCGCAAAAGGUUGCAGGUGUCAUGUGACAAGGUCGGGGGCCUGUGGGUGUGGUGGUGGCGGUGGUGGUC
..........((((((.((((.((.((.(((...((....))....(((((..((((....))))...((((....))))..)))))...........))).)).)))))).)))))).. (-35.02 = -35.30 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:57 2006