Locus 7742

Sequence ID 2L_DroMel_CAF1
Location 21,863,350 – 21,863,470
Length 120
Max. P 0.762149
window12424

overview

Window 4

Location 21,863,350 – 21,863,470
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.14
Mean single sequence MFE -37.64
Consensus MFE -24.02
Energy contribution -27.66
Covariance contribution 3.64
Combinations/Pair 1.03
Mean z-score -2.52
Structure conservation index 0.64
SVM decision value 0.50
SVM RNA-class probability 0.762149
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21863350 120 - 22407834
UCUGGCCUUAAAUUAAGGACGAAGAAGGCGCUCGAGAGAAACAAAAAACCCAAAAACAAUUGAGUUCAGGUGGGGUGGUGGGGCCUCAGGCUGAGAGUCCCGCGCCGGGCGCCAUUAAAG
(((..(((((...)))))....))).((((((((..............((((..(((......)))....))))...((((((((((.....))).)))))))..))))))))....... ( -44.70)
>DroSec_CAF1 151026 118 - 1
UCUGGCCUUAAAUUAAGGACGAAGAAGGCGCUCGAGAGAAACAAAAAACCCAAAAACAAUUGAGUUCAGGUGGGGUGGUGGGGCUUCAGGCUG--AGUCCCGCGUCGGGCGCCAUUAAAG
(((..(((((...)))))....))).(((((((((.............((((..(((......)))....))))...(((((((((......)--)))))))).)))))))))....... ( -44.00)
>DroSim_CAF1 97439 118 - 1
UCUGGCCUUAAAUUAAGGACGAAAAAGGCGCUCGAGAGAAACAAAAAACCCAAAAACAAUUGAGUUCAGGUGGGGUGGUGGGGCUUCAGGCUA--AGUCCCGCGUCGGGCGCCAUUAAAG
((...(((((...)))))..))....(((((((((.............((((..(((......)))....))))...(((((((((......)--)))))))).)))))))))....... ( -41.80)
>DroEre_CAF1 112937 118 - 1
UCUGGCCUUAAAUUAAGG-CAAAGAAGUCGCUCGAGAGAAACAAA-AACGCAAAAACAAUUGUGUUCAGGCUGGGUGGUGGAGGUCCAGGCUGAGAGUCCCGCGUCGGGCGCCAUUAAAG
(((.((((((...)))))-)..))).(.((((((((.(..((...-.((((((......))))))((((.(((((.........))))).))))..))..).).))))))).)....... ( -35.40)
>DroYak_CAF1 105827 100 - 1
UCUGGCCUUAAAUUAAGGACAAAGGAGGCGCUCGAGAAAAACAAAAAACCUAAAAACAAUUGAGUUCAG--------------------UCUAAGAGUCCCGCGUCGGGCGCCAUUAAAG
(((.((((((...))))).)...)))(((((((((.......................((((....)))--------------------)......(.....).)))))))))....... ( -22.30)
>consensus
UCUGGCCUUAAAUUAAGGACGAAGAAGGCGCUCGAGAGAAACAAAAAACCCAAAAACAAUUGAGUUCAGGUGGGGUGGUGGGGCUUCAGGCUGAGAGUCCCGCGUCGGGCGCCAUUAAAG
(((..(((((...)))))....))).(((((((((.............((((..(((......)))....))))...(((((((............))))))).)))))))))....... (-24.02 = -27.66 +   3.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:56 2006