Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,863,041 – 21,863,154 |
Length | 113 |
Max. P | 0.645928 |
Location | 21,863,041 – 21,863,154 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.86 |
Mean single sequence MFE | -29.28 |
Consensus MFE | -22.20 |
Energy contribution | -21.76 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.76 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.645928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21863041 113 + 22407834 CCACAAA-AUAACCGAAA-AA-----AGGAAAUAUGCUAGGGAAAACCACUAAAUCGUGUUGGUUGGGUUCGUCCAAGAGCUGGCCCUGUUGCCAUUUAUUUUCCCCCAGCCCUUUUUGC .......-........((-((-----(((......(((.(((((((.(((......))).((((.((((..((......))..))))....))))....)))))))..)))))))))).. ( -28.40) >DroSec_CAF1 150717 113 + 1 CCACAAA-AUAACCAAAA-AA-----AGGAAAUAUGCUAGGGAAAACCACUAAAUCGUGUUGGUUGGGUUCGUCCAAGAGCUGGUCCUGUUGCCAUUUAUUUUCCCCCAGCCCUUUUUGC .......-........((-((-----(((......(((.(((((((....(((((.(((..((.(.(((((......))))).).))...))).))))))))))))..)))))))))).. ( -25.90) >DroSim_CAF1 97129 114 + 1 CCACAAA-AUAACCAAAAAAA-----AGGAAAUAUGCUAGGGAAAACCACUAAAUCGUGUUGGUUGGGUUCGUCCAAGAGCUGGUCCUGUUGCCAUUUAUUUUCCCCCAGCCCUUUUUGC .......-.........((((-----(((......(((.(((((((....(((((.(((..((.(.(((((......))))).).))...))).))))))))))))..)))))))))).. ( -25.90) >DroEre_CAF1 112624 119 + 1 CCACAAAUAAAAAUCAAA-AAAGAAAAGAAAAUGUGCUAGGGAAAACCACUAAAUCGUGUUGGUAAGGUUCGUCCAAGAGCCGGCCCUGUUGCCAUUUAUUUUCCCGCAGCCUUUUUUGC ..............((((-((((............(((.(((((((((((........).))))..(((((......)))))(((......)))......))))))..))))))))))). ( -29.00) >DroYak_CAF1 105512 113 + 1 UCGCAAA-AAAAGCCAAA-AA-----CGGAAAUAUGCUAGGGAAAACCACUAAAUAGUGUUGGUUAGGGUCGUCCAAGAGCCGGCCCUAAAGCCAUUUAUUUUCCCGUAGCCCUUUUUGC ..(((((-((...((...-..-----.))......(((((((((((.((((....)))).((((((((((((.(.....).))))))))..))))....))))))).))))..))))))) ( -37.20) >consensus CCACAAA_AUAACCAAAA_AA_____AGGAAAUAUGCUAGGGAAAACCACUAAAUCGUGUUGGUUGGGUUCGUCCAAGAGCUGGCCCUGUUGCCAUUUAUUUUCCCCCAGCCCUUUUUGC ............................((((...(((.(((((((((((........).))))..(((((......)))))(((......)))......))))))..)))...)))).. (-22.20 = -21.76 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:55 2006