Locus 7739

Sequence ID 2L_DroMel_CAF1
Location 21,861,197 – 21,861,317
Length 120
Max. P 0.730555
window12420

overview

Window 0

Location 21,861,197 – 21,861,317
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 92.06
Mean single sequence MFE -33.66
Consensus MFE -29.89
Energy contribution -30.31
Covariance contribution 0.42
Combinations/Pair 1.18
Mean z-score -1.41
Structure conservation index 0.89
SVM decision value 0.42
SVM RNA-class probability 0.730555
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21861197 120 + 22407834
GUCGCUCAGCUUGAUAAACGCCCGCUUGCCGCCUUUUGGCAUUUUAAAAUUGUCGCCAAAAACAUCCACCGAGUCCUCACAUCCUCUCCGGCUGGCAAGUGGCUUCAUUUGCUGGCGCUG
(.(((.((((.(((.....(((.(((((((((((((((((..............))))))).........(((..........)))...))).)))))))))).)))...)))))))).. ( -40.04)
>DroSec_CAF1 149193 120 + 1
GUCGUUCAGCUUGAUAAACGCCCGCUUGCCGCCUUUUGGCAUUUUAAAAUUGUCGCCAAAAACAUCCACCGAGUCCUCACAUCCUCUCCGGCUGGCAAGUGGCUUCAUUUGUUGGCACUG
...(((((((.(((.....(((.(((((((((((((((((..............))))))).........(((..........)))...))).)))))))))).)))...))))).)).. ( -34.24)
>DroSim_CAF1 95587 120 + 1
GUCGUUCAGCUUGAUAAACGCCCGCUUGCCGCCUUUUGGCAUUUUAAAAUUGUCGCCAAAAACAUCCACCGAGUCCUCACAUCCUCUCCGGCUGGCAAGUGGCUUCAUUUGCUGGCACUG
...(((((((.(((.....(((.(((((((((((((((((..............))))))).........(((..........)))...))).)))))))))).)))...))))).)).. ( -36.64)
>DroEre_CAF1 111594 120 + 1
GUCGUUCAGCUUGAUAAACGCCCGCUGGCCGCCUUUUGGCAUUUUAAAAUUGUCGCCAAAAACAUCCACCGAGUCCUCACAUCCUCUCCGACUGGCAAGUGGCUUCAUUUGCUGGCGCUG
......((((..(((((..(((....))).(((....))).........)))))(((..............((((..............))))((((((((....))))))))))))))) ( -31.84)
>DroYak_CAF1 103071 120 + 1
GUCGUUCAGCUUGAUAAACGCCCGCUUGUCGCCUUUUGGCAUUUUAAAAUUGUCGCCAAAAACAUCCACCGAGUCCUUACAUUCUCACCGGUUGGCAAGUGGCUUCAUUUGCAGGCGCUG
........(((((.((((.(.(((((((((((((((((((..............))))))).........(((..........)))...)).))))))))))...).))))))))).... ( -32.44)
>DroAna_CAF1 98908 112 + 1
GUCGUUCAGCUUGAUAAACGCCCGCUUGCUGCCGUUUGGCAUUUUAAAAUUGUCGCCAAAAACAUCCACCGUACCCU--------CCAAAACUGGCAAGUGGCUUCAUUUGCUGGCGCUG
(.(((.((((.(((.....(((.(((((((....((((((..............)))))).((.......)).....--------........)))))))))).)))...)))))))).. ( -26.74)
>consensus
GUCGUUCAGCUUGAUAAACGCCCGCUUGCCGCCUUUUGGCAUUUUAAAAUUGUCGCCAAAAACAUCCACCGAGUCCUCACAUCCUCUCCGGCUGGCAAGUGGCUUCAUUUGCUGGCGCUG
...(((((((.(((.....(((.(((((((((((((((((..............))))))).........(((..........)))...))).)))))))))).)))...))))).)).. (-29.89 = -30.31 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:52 2006