Locus 7737

Sequence ID 2L_DroMel_CAF1
Location 21,856,491 – 21,856,581
Length 90
Max. P 0.940074
window12418

overview

Window 8

Location 21,856,491 – 21,856,581
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 95.56
Mean single sequence MFE -23.05
Consensus MFE -19.79
Energy contribution -20.85
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -3.31
Structure conservation index 0.86
SVM decision value 1.31
SVM RNA-class probability 0.940074
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21856491 90 - 22407834
GAGCUGCCUUUCCUUACCCGGCACUCAGCUCCAUACCAUCCCUUUCAACAUACUGUAGUGCCGCCUCUCUCGCACUGCAGUGCAUCUGUU
((((((.....((......))....))))))...............(((((((((((((((..........)))))))))))....)))) ( -24.80)
>DroSec_CAF1 144386 90 - 1
GAGCUGCCUUUCCUUACCCGGCACUCAGCUCCAUACCAUCCCUUUCAACAUACUGUAGUGCCGCCUCUCUCGCACUGCAGUGCAUCUGUU
((((((.....((......))....))))))...............(((((((((((((((..........)))))))))))....)))) ( -24.80)
>DroSim_CAF1 90766 90 - 1
GAGCUGCCUUUCCUUACCCGGCACUCAGCUCCAUACCAUCCCUUUCAACAUACUGUAGUGCCGCCUCUCUCGCACUGCAGUGCAUCUGUU
((((((.....((......))....))))))...............(((((((((((((((..........)))))))))))....)))) ( -24.80)
>DroEre_CAF1 106694 90 - 1
GAGCUGCCUUUCGUUCCCCGCCACUCAGCUCCAUUCCAUCCCUUUCAACAUGGUAUAGUGCCGCCUCUCUCGCACUGCUGUGCAUCUGUU
((((((.....((.....)).....))))))...............((((..((((((((..((.......))..))))))))...)))) ( -17.80)
>consensus
GAGCUGCCUUUCCUUACCCGGCACUCAGCUCCAUACCAUCCCUUUCAACAUACUGUAGUGCCGCCUCUCUCGCACUGCAGUGCAUCUGUU
((((((.....((......))....))))))...............(((((((((((((((..........)))))))))))....)))) (-19.79 = -20.85 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:50 2006