Locus 7736

Sequence ID 2L_DroMel_CAF1
Location 21,856,300 – 21,856,418
Length 118
Max. P 0.568812
window12417

overview

Window 7

Location 21,856,300 – 21,856,418
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -22.10
Consensus MFE -20.60
Energy contribution -22.10
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.93
SVM decision value 0.07
SVM RNA-class probability 0.568812
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21856300 118 + 22407834
AAAUUCAGCAAAGAGGAAACACAGACCUCAAGCGAAUGGAGGAGUCUAUAUACAUGAAAAUGAAGAUGUAAAUUAUACGAAAUGUGAGGCAUUGACCAACCAAAGAGCAGCCACAACA
.......((...((((.........))))..((...(((..(.(((......(((....)))..(((((...(((((.....))))).)))))))))..)))....)).))....... ( -22.10)
>DroSec_CAF1 144195 118 + 1
AAAUUCAGCAAAGAGGAAACACAGACCUCAAGCGAAUGGAGGAGUCUAUAUACAUGAAAAUGAAGAUGUAAAUUAUACGAAAUGUGAGGCAUUGACCAACCAAAGAGCAGCCACAACA
.......((...((((.........))))..((...(((..(.(((......(((....)))..(((((...(((((.....))))).)))))))))..)))....)).))....... ( -22.10)
>DroSim_CAF1 90575 118 + 1
AAAUUCAGCAAAGAGGAAACACAGACCUCAAGCGAAUGGAGGAGUCUAUAUACAUGAAAAUGAAGAUGUAAAUUAUACGAAAUGUGAGGCAUUGACCAACCAAAGAGCAGCCACAACA
.......((...((((.........))))..((...(((..(.(((......(((....)))..(((((...(((((.....))))).)))))))))..)))....)).))....... ( -22.10)
>consensus
AAAUUCAGCAAAGAGGAAACACAGACCUCAAGCGAAUGGAGGAGUCUAUAUACAUGAAAAUGAAGAUGUAAAUUAUACGAAAUGUGAGGCAUUGACCAACCAAAGAGCAGCCACAACA
.......((...((((.........))))..((...(((..(.(((......(((....)))..(((((...(((((.....))))).)))))))))..)))....)).))....... (-20.60 = -22.10 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:49 2006