Locus 7735

Sequence ID 2L_DroMel_CAF1
Location 21,855,501 – 21,855,596
Length 95
Max. P 0.641252
window12416

overview

Window 6

Location 21,855,501 – 21,855,596
Length 95
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.00
Mean single sequence MFE -23.39
Consensus MFE -14.21
Energy contribution -14.41
Covariance contribution 0.20
Combinations/Pair 1.12
Mean z-score -2.10
Structure conservation index 0.61
SVM decision value 0.22
SVM RNA-class probability 0.641252
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21855501 95 - 22407834
ACGGUCCCGGUUCG-------GGCUGACCAAUAAUAAUAAGCAAAUGUCAGCUGGAUUCGACCAAG------GGAAUG--------AAAGAUAAUAAAAAA----CCACAGAGAAACGAA
.((.(((((((((.-------(((((((..................))))))).))....)))..)------))).))--------...............----............... ( -19.77)
>DroSec_CAF1 143308 95 - 1
ACGGCCCCGGUCCG-------GGCUGACCAAUAAUAAUAAUCAAAUGUCAGCUGGAUUCGACCAAG------GGAAUG--------AAAGAUAAUAAAAAA----CCACAGAGAAACGAA
.((..((((((((.-------(((((((..................))))))).)....))))..)------))..))--------...............----............... ( -19.47)
>DroSim_CAF1 89645 95 - 1
ACGGUCCCGGUCCG-------GGCUGACCAAUAAUAAUAAGCAAAUGUCAGCUGGAUUCGACCAAG------GGAAUG--------AAAGAUAAUAAAAAA----CCACAGAGAAACGAA
.((.(((((((((.-------(((((((..................))))))).)....))))..)------))).))--------...............----............... ( -20.77)
>DroEre_CAF1 105401 95 - 1
ACGGUCCCGGUCCG-------GGCUGACCAAUAAUAAUAAGCAAAUGUCAGCUGGACUCGACCAAG------GGAAUG--------AAAGAUAAUAAAAAA----CCACCGAGAAACGAU
..((((..((((((-------(.(((((..................)))))))))))).))))..(------(.....--------...............----))............. ( -22.52)
>DroAna_CAF1 93585 120 - 1
ACGGUCCCGGUCCGGACUCCGGACUGACCAAUAAUAAUAAGCAAAUGUCAGCUGGACUCGUCCAAAAGGGGGGGUCUGAAAAGGCCAAAAACAAUAUAAAAUACAACACCAAGAAACGAA
..(((((((((((((...)))))))..((..........(((........)))(((....)))....)))))(((((....))))).....................))).......... ( -34.40)
>consensus
ACGGUCCCGGUCCG_______GGCUGACCAAUAAUAAUAAGCAAAUGUCAGCUGGAUUCGACCAAG______GGAAUG________AAAGAUAAUAAAAAA____CCACAGAGAAACGAA
..((((..(((((........(((((((..................)))))))))))).))))......................................................... (-14.21 = -14.41 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:48 2006