Locus 7733

Sequence ID 2L_DroMel_CAF1
Location 21,850,992 – 21,851,092
Length 100
Max. P 0.516646
window12412

overview

Window 2

Location 21,850,992 – 21,851,092
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.70
Mean single sequence MFE -28.64
Consensus MFE -22.96
Energy contribution -24.28
Covariance contribution 1.32
Combinations/Pair 1.08
Mean z-score -1.48
Structure conservation index 0.80
SVM decision value -0.03
SVM RNA-class probability 0.516646
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21850992 100 - 22407834
AAACUACAGUUGGGUUCAUAACCUCAUUUCAAAUUGGCAAACAGGUGCGACACAAAUCGUGUCCACGAUCAGCGCUGUCCGUAGUGCGAGAUGAUGAAAA--------------------
............(((.....)))(((((((..............(((.(((((.....)))))))).....((((((....)))))))))))))......-------------------- ( -26.30)
>DroSec_CAF1 138649 100 - 1
AAACUACAGUUGGGUUCAUAGCCUCAUUUCAAAUUGGCAAACAGGUGCGACACAAAUCGUGUCCACGUUCAGCGCUGUCUGUAGUGCGGGGUGAUGAAAA--------------------
..............(((((.(((((...................(((.(((((.....)))))))).....((((((....))))))))))).)))))..-------------------- ( -29.50)
>DroSim_CAF1 85093 100 - 1
AAACUACAGUUGGGUUCAUAGCCUCAUUUCAAAUUGGCAAACAGGUGCGACACAAAUCGUGUCCACGUUCAGCGCUGUCUGUAGUGCGGGGUGAUGAAAA--------------------
..............(((((.(((((...................(((.(((((.....)))))))).....((((((....))))))))))).)))))..-------------------- ( -29.50)
>DroYak_CAF1 90577 100 - 1
AAACUACAGUUGGGUUCAUAACCUCAUUUCAAAUUGGCAAACAGGUGCGACACAAAUUGUGUCCACGUUUAGCACCGUUUGUAAGGCGAGGUGAUGAAAA--------------------
..............(((((.(((((.((((((((.(((((((..(((.(((((.....)))))))))))).)).).))))).)))..))))).)))))..-------------------- ( -29.50)
>DroAna_CAF1 88959 116 - 1
AAACUACAGUUGGGUUCAUAACCUCAUUUCAAAUUGGCAAACAGGUGCGACACAAGUCGUGUCCACGUAUGGCGCU----GUAAUGCGAUAUGAUGAUACUUUGAGUUACAAAGCACCAG
......(((((((((.....)))).......))))).......((((((((....)))(((((..(((((.(((..----....))).)))))..))))).............))))).. ( -28.41)
>consensus
AAACUACAGUUGGGUUCAUAACCUCAUUUCAAAUUGGCAAACAGGUGCGACACAAAUCGUGUCCACGUUCAGCGCUGUCUGUAGUGCGAGGUGAUGAAAA____________________
..............(((((.(((((...................(((.(((((.....)))))))).....((((((....))))))))))).)))))...................... (-22.96 = -24.28 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:45 2006