Locus 7732

Sequence ID 2L_DroMel_CAF1
Location 21,850,638 – 21,850,736
Length 98
Max. P 0.526176
window12411

overview

Window 1

Location 21,850,638 – 21,850,736
Length 98
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 73.93
Mean single sequence MFE -25.41
Consensus MFE -14.00
Energy contribution -15.67
Covariance contribution 1.67
Combinations/Pair 1.10
Mean z-score -1.74
Structure conservation index 0.55
SVM decision value -0.01
SVM RNA-class probability 0.526176
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21850638 98 - 22407834
GAGGCAUCGGCAACUCAGCCACGUUUUGCACACA----UAUGUGGCAUGUUGAAAUAGAACGGCCAUAUCAACAUCAGCA-----------------ACACAAGCUGCAUAA-AAGCGUA
..(((...(....)...)))(((((((.......----.(((((((.((((.......)))))))))))......((((.-----------------......))))....)-)))))). ( -25.20)
>DroSim_CAF1 84686 118 - 1
GAGGCAGCGGCAACUCAGCC-CAUUUUGCACACAUACAUAUGUGGCAUGUUUAAAUAGAACGGCCACAUCAACAUCAGCAGCGGCCCAGAAACAGCAACAAAAGCUUCAUAA-AAGCGUA
(.(((.(((((......)))-.....(((..........(((((((.(((((.....))))))))))))........))))).))))................((((.....-))))... ( -29.37)
>DroAna_CAF1 88301 104 - 1
AAGUUAGCAGCAACUCAGCCACGCUUUG--------CAUAUGUGGCAUGUUUAAAUAGAACGGCAAUAUCAACAACAGCAGCAG--------CAGCAACAAAGGCUGUAUAAAAAGCAUA
......((.......(((((..((((((--------...((((.((.(((((.....))))))).))))...))).))).((..--------..))......)))))........))... ( -21.66)
>consensus
GAGGCAGCGGCAACUCAGCCACGUUUUGCACACA__CAUAUGUGGCAUGUUUAAAUAGAACGGCCAUAUCAACAUCAGCAGC_G________CAGCAACAAAAGCUGCAUAA_AAGCGUA
...((((((((......)))...................(((((((.(((((.....))))))))))))..................................)))))............ (-14.00 = -15.67 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:44 2006