Locus 7731

Sequence ID 2L_DroMel_CAF1
Location 21,850,356 – 21,850,450
Length 94
Max. P 0.543614
window12410

overview

Window 0

Location 21,850,356 – 21,850,450
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 76.95
Mean single sequence MFE -26.30
Consensus MFE -16.80
Energy contribution -17.02
Covariance contribution 0.23
Combinations/Pair 1.11
Mean z-score -1.50
Structure conservation index 0.64
SVM decision value 0.02
SVM RNA-class probability 0.543614
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21850356 94 - 22407834
CCGUACACCUGAUCACUUCCUGGACUAGAGGGGCAGAGUAGGGAUUGGAGGAGAACCAGACAUGAGUCGGGAAAAAUUCGAUUGUCUGGCAGGU
......(((((.(((.((((((..((........))..)))))).))).......(((((((...((((((.....)))))))))))))))))) ( -26.60)
>DroEre_CAF1 100115 94 - 1
CUGUACACCUGAUCAAUUCCUAGACUAGAGGGAACGAGUGGAGAUUGGAGGGGAACCAGACGUGAGUCGGGAAAAAUUCGAUUGUCUGGCAGGU
......(((((.(((.(((((........))))).....(..(((((((((....)).(((....)))........)))))))..))))))))) ( -26.10)
>DroYak_CAF1 89198 77 - 1
CUGUACACCUGAUCAAUUCCUAUACUACAGGGGUCG-GUAGGGAUUGGAGGGAAACCAGACGUGAGUCGGGAAUAAGU----------------
.......(((..((((((((((((((.....)))..-))))))))))).((....)).(((....)))))).......---------------- ( -26.20)
>consensus
CUGUACACCUGAUCAAUUCCUAGACUAGAGGGGACGAGUAGGGAUUGGAGGGGAACCAGACGUGAGUCGGGAAAAAUUCGAUUGUCUGGCAGGU
.......(((..((((((((((................)))))))))).((....)).(((....))))))....................... (-16.80 = -17.02 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:43 2006