Locus 773

Sequence ID 2L_DroMel_CAF1
Location 2,202,927 – 2,203,026
Length 99
Max. P 0.533862
window1264

overview

Window 4

Location 2,202,927 – 2,203,026
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.72
Mean single sequence MFE -34.85
Consensus MFE -20.52
Energy contribution -21.72
Covariance contribution 1.19
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.59
SVM decision value 0.00
SVM RNA-class probability 0.533862
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 2202927 99 - 22407834
G-------A--CCCUAGGGGCAAUCUUCGCUCGCAUGGUGCAUGGUUGUGUUACAUUGGGAAAAGGAGCCCAGAUUUCGCAGCCGAGCGAUGCACUUGCCAGGCGAAA-
.-------.--((((...(((((...((((((((.....))..(((((((.....(((((........)))))....))))))))))))).....)))))))).)...- ( -36.40)
>DroVir_CAF1 28876 101 - 1
CUAAUGCCA--GCCCUGGGGCAAUCGUCGCUCGCAUGGUGCAUGGUUGUGUUACAUUGGGAAAAGGAGCCCAGAACUUGUAGCC--GCGUUGCACUUUG---GCUAAA-
.....((((--(((....)))...............((((((....((((((((((((((........)))))....))))).)--))).)))))).))---))....- ( -30.80)
>DroPse_CAF1 46719 100 - 1
G-------GUCCCCUAGGGGCCAUCCGCACUCGCAUGGUGCAUGGUUGUGUUACAUUGGGAAAAGGAGCCCAGAUUUCGUAGCGAAGCGAUGCACUUUUU--GCAAAAA
(-------(((((...))))))..........(((.(((((((.(((.((((((..((((........))))(....))))))).))).)))))))...)--))..... ( -38.80)
>DroMoj_CAF1 28183 101 - 1
CUAAUGGCA--GCCCUGGGGCAGUCGUCGCUCGCAUGGUGCAUGGUUGUGUUACAUUGGGAAAAGGAGCCCAGAACUCGUAGCC--ACGUUGCACUUUG---GCAAAA-
...(((((.--(((....))).))))).....((..((((((((((((((.....(((((........)))))....)))))))--)...))))))...---))....- ( -33.20)
>DroAna_CAF1 11863 92 - 1
G------AA--CCCUAGGGGCAAUCUUUGCUCGCAUGGUGCAUGGUUGUGUUACAUUGGGAAAAGGAGCCCAGAUUUCGCAGCUAAGCGAUGCACUUGC--------A-
.------..--......(((((.....)))))(((.((((((((((((((.....(((((........)))))....))))))).....))))))))))--------.- ( -31.10)
>DroPer_CAF1 49532 100 - 1
G-------GUCCCCUAGGGGCCAUCCGCACUCGCAUGGUGCAUGGUUGUGUUACAUUGGGAAAAGGAGCCCAGAUUUCGUAGCGAAGCGAUGCACUUUUU--GCAAAAA
(-------(((((...))))))..........(((.(((((((.(((.((((((..((((........))))(....))))))).))).)))))))...)--))..... ( -38.80)
>consensus
G_______A__CCCUAGGGGCAAUCCUCGCUCGCAUGGUGCAUGGUUGUGUUACAUUGGGAAAAGGAGCCCAGAUUUCGUAGCCAAGCGAUGCACUUUC___GCAAAA_
.................((((.......))))....(((((((.(((..(((((.(((((........))))).....)))))..))).)))))))............. (-20.52 = -21.72 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:12 2006