Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 21,847,209 – 21,847,300 |
Length | 91 |
Max. P | 0.748713 |
Location | 21,847,209 – 21,847,300 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -32.98 |
Consensus MFE | -15.48 |
Energy contribution | -16.32 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.18 |
Mean z-score | -2.18 |
Structure conservation index | 0.47 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21847209 91 + 22407834 GCAGCAGGAGCAGAUGCUGCAGCGGCGGUGAGUAUCAGAAAGCACCACAGUGCCAUAGAAAAGUGGCACACUCAUCGG------------------CAACUGCAAUGGC ((((((........)))))).((((((((((((....(....)......(((((((......))))))))))))))).------------------...))))...... ( -34.60) >DroSec_CAF1 135094 91 + 1 GCAGCAGGAGCAGACGCUGCAGUGGCGGUGAGUAUCAGAAAGCACCACAGUGGCAUAGAAAAGUGGCACAGUCAUCGG------------------CAACUGCAAUGGC ...((....((((..((((..(((((((((..(......)..))))...(((.(((......))).))).))))))))------------------)..))))....)) ( -29.90) >DroSim_CAF1 81572 91 + 1 GCAGCAGGAGCAGACGCUGCAGCGGCGGUGAGUAUCAGAAAGCUCCACAGUGGCAUAGAAAAGUGGCACAGUCAUCGG------------------CAACUGCAAUGGC ...((((..((.((((((((....)))))((((........))))....(((.(((......))).))).)))....)------------------)..))))...... ( -27.80) >DroYak_CAF1 85958 91 + 1 GCAGCAGGAGCAGGCGCUGCAACAGCGGUGGGUAUCAGAAAGAGCCACCGUGCCAUAGAAAAGUGGAACAGUCAUCGC------------------CAAUUGCAAUGGC (((((....)).((((.(((....(((((((...((.....)).))))))).((((......))))....).)).)))------------------)...)))...... ( -28.70) >DroAna_CAF1 85327 109 + 1 GGAGCAGGAGCAGCUGCUGCAAUGUCGGUGAGUGUCAAAAAAUGCCACAGAGGCAUAGAAAACUGGCACAGCCAGCGACAGCGACUCGCCGAGUUGCAACUGAAACUGC ...((((...(((....((((((.((((((((((((.....(((((.....)))))......(((((...))))).)))....))))))))))))))).)))...)))) ( -43.90) >consensus GCAGCAGGAGCAGACGCUGCAGCGGCGGUGAGUAUCAGAAAGCACCACAGUGGCAUAGAAAAGUGGCACAGUCAUCGG__________________CAACUGCAAUGGC ...((((..((((...)))).....((((((((........))......(((.(((......))).)))..))))))......................))))...... (-15.48 = -16.32 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:40 2006