| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 21,847,078 – 21,847,188 |
| Length | 110 |
| Max. P | 0.610550 |
| Location | 21,847,078 – 21,847,188 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -37.45 |
| Consensus MFE | -26.71 |
| Energy contribution | -26.60 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.610550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 21847078 110 - 22407834 -CCACUCUCGGGGAA---UCGGAAGCCUUCGUCCUUCAGUGCGAGGAACCAUUCCGCUUCGCGCCUCGGAUCACGGCAGCUGCAUUGUCUGCUGUUGACCAACUUUGGUGGCAG------ -(((((...((((..---.(((((((..(((..(....)..)))(((.....)))))))).))))))((.((((((((((......).)))))).)))))......)))))...------ ( -37.70) >DroSec_CAF1 134963 110 - 1 -CCACCCUCGGGGAA---UCGGAAACCUUCGUCCUCCAGUGCGAGGAACCAUUCCGCUUCGCGCCUCGGAUCACGGCAGCUGCAUUGUCUGCUGUUGACCAACUUUGGUGGCAG------ -(((((...((((..---.((((....))))..)))).((((((((..........))))))))...((.((((((((((......).)))))).)))))......)))))...------ ( -39.00) >DroSim_CAF1 81440 111 - 1 CCCACCCUCGGGGAA---UCGGAAACCUUCGUCCUCCAGUGCGAGGAACCAUUCCGCUUCGCGCCUCGGAUCACGGCAGCUGCAUUGUCUGCUGUUGACCAACUUUGGUGGCAG------ .(((((...((((..---.((((....))))..)))).((((((((..........))))))))...((.((((((((((......).)))))).)))))......)))))...------ ( -39.30) >DroEre_CAF1 96549 110 - 1 -CCACUCCCGGGAAA---UCGAAAACCUUCGUCCUCCAGUGCGAGGAACCAUUCCGCUUCGCGCCUUGGAUCACGGCAGCUGCAUUGUCUGCUGUUGACCAACUUUGGUGACAG------ -.((((....(((..---.((((....))))...))).((((((((..........)))))))).((((.((((((((((......).)))))).)))))))....))))....------ ( -34.20) >DroYak_CAF1 85857 88 - 1 --------------------------CUUCGUCCGCCUGUGCGAGGAACCAUUCCUCUUCGCGCCUUGGAUCAAGGCAGCUGCAUUGUCUGCCUUUGACCAACUUUGGUGGCAG------ --------------------------....(.(((((.(((((((((........))))))))).((((.((((((((((......).))))).))))))))....))))))..------ ( -37.20) >DroAna_CAF1 85189 115 - 1 -CAUCCUUCGGACGUUCCUCGAUUGCC---GUCGGCCA-UUCGAGGAGCCCUUCCGCUUCGCGUUUUGGAUCACAGCAGCUGCAUUGUCUGCUAUUGACCAACUUUGGUGGCAUGGCUAA -.......((((.(((((((((..(((---...)))..-.)))))))))...))))....((((((((.....))).))).))...(((((((((..(......)..)))))).)))... ( -37.30) >consensus _CCACCCUCGGGGAA___UCGGAAACCUUCGUCCUCCAGUGCGAGGAACCAUUCCGCUUCGCGCCUCGGAUCACGGCAGCUGCAUUGUCUGCUGUUGACCAACUUUGGUGGCAG______ ..............................(((..(((((((((((..........))))))))...((.((((((((((......).)))))).))))).....))).)))........ (-26.71 = -26.60 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:39 2006