Locus 7727

Sequence ID 2L_DroMel_CAF1
Location 21,837,435 – 21,837,554
Length 119
Max. P 0.808527
window12405

overview

Window 5

Location 21,837,435 – 21,837,554
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.70
Mean single sequence MFE -19.21
Consensus MFE -17.76
Energy contribution -17.92
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.16
Structure conservation index 0.92
SVM decision value 0.64
SVM RNA-class probability 0.808527
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 21837435 119 - 22407834
CCAACUCCAAUCCGCAACCACCUCCUGAUGUCGCAUUUACAACCCUUAGCGCGCAUAAAUUACUUUUAUUACCUGUCAGGGGUAUUUGUACUCUCCGCCACUUCGUUCCACCGCUCUCC-
.............((((..(((.(((((((((((..............))).))(((((.....))))).....)))))))))..))))..............................- ( -17.54)
>DroSec_CAF1 124783 119 - 1
CCAACUCCAAUCUGCAACCACCUCCUGAUGUCGCAUUUACAACCCUUAGCGCGCAUAAAUUACUUUUAUUACCUGUCAGGGGUAUUUGUACUCUCCGCCACUUCGUUCCACCGCUCUCC-
............(((((..(((.(((((((((((..............))).))(((((.....))))).....)))))))))..))))).............................- ( -18.14)
>DroSim_CAF1 72070 119 - 1
CCAACUCCAAUCUGCAACCACCUCCUGAUGUCGCAUUUACAACCCUUAGCGCGCAUAAAUUACUUUUAUUACCUGUCAGGGGUAUUUGUACUCUCCGCCACUUCGUUCCACCGCUCUCC-
............(((((..(((.(((((((((((..............))).))(((((.....))))).....)))))))))..))))).............................- ( -18.14)
>DroEre_CAF1 86116 119 - 1
CCAACUCCAAUCUGCAACCACCUCCUGAUGUCGCAUUUACAACCCUUAGCGCGCAUAAAUUACUUUUAUUACCUGUCAGGGGUAUUUGUACUCUCCGCCACUUCGUUCCACCGCUCUCC-
............(((((..(((.(((((((((((..............))).))(((((.....))))).....)))))))))..))))).............................- ( -18.14)
>DroYak_CAF1 76941 119 - 1
CCAACUCCAAUCUGCAACCACCUCCUGAUGUCGCAUUUACAACCCUUAGCGCGCAUAAAUUACUUUUAUUACCUGUCAGGGGUAUUUGUAGUUUCCGCCACUUCGUUCCACCGUCCUCC-
...........((((((..(((.(((((((((((..............))).))(((((.....))))).....)))))))))..))))))............................- ( -20.84)
>DroAna_CAF1 75918 119 - 1
CCGACUCCAAUCUGCAACCACCUCCUGAUGUCGCAUUUACAACCCUUAGCGCGCAUAAAUUACUUUUAUUACCUGUCAGGGGUAUUUGUACUCUCUGCCAUUC-UGGCCACCGACCUCCG
.((.........(((((..(((.(((((((((((..............))).))(((((.....))))).....)))))))))..)))))......(((....-.)))...))....... ( -22.44)
>consensus
CCAACUCCAAUCUGCAACCACCUCCUGAUGUCGCAUUUACAACCCUUAGCGCGCAUAAAUUACUUUUAUUACCUGUCAGGGGUAUUUGUACUCUCCGCCACUUCGUUCCACCGCUCUCC_
............(((((..(((.(((((((((((..............))).))(((((.....))))).....)))))))))..))))).............................. (-17.76 = -17.92 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:38 2006